SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp33496_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:98.74 TPM:172.22
ORF EntryO_BomoEE2106_complete:A_BomoEE_comp33496_c0_seq1
Sequence
(Nucleotide)
GACGTGTGCTCTTCCGATCTCGCGCCCGCGCCGCACCACGCGTCGCATCACGCGCCCTCG
CCGCACGGAGCGAGCAGTTCGGGCGGAGGGCGCGGCGCCGGGCGGCCCAGCGGCGCGTCC
AAGACCGCGTCGTTCCTGTCGTCGCTGAACCCGTCGCGCTGGGGCCGCGCGCCGCACCAG
CACAAGGACACGGCGCTGCTCGCCTCGCCGCACGCCAGCGCCAACCTCACCGTGCAGAAC
AAAGAGAAAGTCCGCGAGTGGATTTCGTGGTCGGCGCGTCGGCTGCGCTGCGAGTGGGGA
GCGCTGGGCGGCGGCGCCGGGGCGCTGGAGCAGCTGGGAGCGCTGGCGGCCGCGCTGCCG
CACGCTGCGCACTCGCGCGCCGCCCTGGCACATCTCCGCGACACGCTGCTGCATCACGAC
GTCTCGCCCTTCGAGGTGAACCATTCCGGAGTATTGGGCGCCCTGCACCAATACCTAACT
GGCTTCGATATGGAAGTGGATGGTTTGGAAAAGCGCGACGGCGATGGCGAAGGACAGGAG
TCCGCTGATTTGGTGCAAGCGTGTGAAGAGCGACTGCGTTTATTCTTACATGTGTTTGCT
GAGATGCCCATTGAACCTGAAGTAAACGATTGGAAAGAGTCGTTGGGCAGCAGCACGGCC
TTGTGTGCGCTGGTGGCGAAGGTGAACGCGTGCGTGTCGCATCTCGAGCAGTTTCCGGTG
CGAGTCCACGACCTACCGGCCCGTCCCGCCACGTCCGCTCTTAAATTCTTCAACACGCAC
CAGCTCATGTGTGATCTCAAACGTCATCCTTCGTGCAACACTTTGAAGCAATGGAAGGGT
GGTGTAGTACGAATAGACCCATTAGCTTTAGTTCAAGCCATCGAGAGATACCTGGCGCAG
CGCGGGTACGCCCAGGGCCGCACGCGCTCGGACTCTGCGGGCGCGCACTCGGACGACGAG
CCCGCCTCCGATGACGACGTCGACGACGCCCTGCCCGCGCCGCCGCAGCCCACCAACGAT
TCTGAACACAAACTCGAGTTCCTGATCGGCGATACAGTGCTGCCGTACAACATGACCGTG
TACCAGGCGGTGCGACAGTTCGGGGAACAAACGGACGCCGACACGGACACCGAAACTCCA
TTGGCGAACGCGGGGATATGGGTCCAGACACACACGATATATTATCGCGCCGTGGAGCCA
AATGAACAACCGCGTTCCGAAAGCACTCCGTCAAAGAAAGGCAAAGGACAACCCACAAAG
ATCTCATCCCGACGAAAACCTGATTTACTCTGGAACGAGGGCGCGGTGCCGGCGCGTGCG
TCATCGCTGGTGGTGATGGTGCGCGCGGCGCTGCTCACGGAGGGCGACGTGCGGGACGCC
TCGCTGCCCGCGCTGGGCGTGCTGCGCGCCCTGCACGCCCTGTCGCGCCACTGGCACGCG
CTCTACCGCGCCGCCTGTCTGCCGGACCACCGCCCTCTCGTGCCGCACGCAGACTTCATC
AATGCTAAGCTCGCCGCCAAAGCCAATAGACAGTTGCAAGATCCATTAGTAATAATGACA
GGCAATCTACCGCCGTGGCTAAAAAAGATCGCCTACGCATGTCCGTTCGTGTTGCCGTTC
GAGTGTCGGCACTTGTTATTCTACGTGGTGTCTTTCGACCGCGACCGCGCCCTGCAGCGG
CTGCTGGAGGCGGGCGGGGAGCGCGGCGGGACGGCGGGCGGCGAGACGGAGCGCGTGGCG
CCTCGCCTCGACCGACGCAAGCGCACCGTGCAGCGACACAACGTGCTACGCCAGGCCGAA
CACGTCATGCACGAGTTCGCGCACACCAAGGCGCTCCTCGAGATTCAGTACGAGAACGAA
GTCGGCACCGGTCTCGGGCCCACCTTGGAGTTCTACGCGCTGGTCTCGCAAGAACTGCAA
CGCGCGGATCTCGATCTTTGGCACGGCAGCGAAAACTTCAAACAGAAGCCTAGCTCTTTC
GGGGGTGAAATTGTGAAATCGGGCGAAGCGGCGGCCCGCCTCGCTACTTCGGTACGCGAC
GGTTTGAACTTGGACGAAGAACGTACGCGCGCCACTTCACCGACGGACCGTGATAAAGAT
GCTCCCGAGCCGGCTGCCTTCGTTTCGTGGCCGTGCGGACTCTTTCCGCAGGCGCTAGGT
CGCAACGCCCGCGCATCTCATCTCTCTCGAGTCAAAGCCAAATTCCGCTTCCTTGGAAAG
TTCATGGCTAAAGCGGTTATGGATTCACGAATGGTGGATATTCCTCTGTCGGTAACAATG
TACCGATGGGTGGTGAACGAAGAACGTTGGCTAAGCTTGAGCGACGTGCGACACGTGGCG
CCCGAACTGTGGCGTTCTCTGTGTCGTTTACGGCGCGTCGCCGATCGCGCACAACACATC
GCAGCCGACACCCGACATACACAGGACCAGAAGAATCAACTTATAAGTAACCTTGAGCTA
GATGGATGTCCGATTGAAGAGCTCGGGCTCGACTTCATATTGCCCGGAGACGGATGCACG
GAACTGCGTCGGGGTGGCAGAGACATGCCCGTCACTGCGCACAATTTGCAAAATTATATT
AATCTCGTAACTCATTGGCTACTTTTTGAAGGTGTATCAAAACAGATGGAAGCTTTCAAA
GAAGGATTTGAGTCGGTATTTCCTTTGAGTAACTTAAAAATATTTTATCCTGAAGAGTTG
GAACAAGTGTTTTGCGGAAGTCCTTCAGGTGGTCGTGACCAACGATGGGATCCACGTATG
CTGGCGGAATGTATTCGTCCGGATCATGGATACAATGCAGAATCGCGGGCTATACGCATG
CTTATTGATATTTTGGCTTCGTACAACCGTGAAGAACAACGACACTTCTTACAGTTTGTT
ACTGGAAGTCCAAGGCTGCCAACTGGTGGATTCAAGGCATTGAATCCACCACTAACTGTG
GTGCGTAAATCGCTGGAGTCTTCATTGGATCCGGATGAATATTTGCCATCAGTGATGACA
TGTGTCAACTACTTGAAGCTGCCAGACTACAGTAGCGCTGAGGTGATGCGCGCTAAGCTA
CGGCTCGCTGCTTCTGAGGGACAACATTCGTTCCACCTTTCATAATTGGCTCCAAGTTTC
CTCTTTTACTGTGATTACATATATCGCCCCCTTTGTATACACGTGTGAATGCGGTTAGTG
ATATCTTATTGTAATTTTGTTATAGTCAGCAGTGTATAAGCTCTGGACAAATGTTTATGT
GCAATCAGAACCTATATTTTATAATGTGATGGACACTGAAAGTGCGGCGTTCTTAGTTTT
GTTCATATTTTCGATTCTTTTAGATTACATAGATATGTTTATATCATATTTTGCGTTAAT
TTAATGTGATAGCTTTGTATATTTCTTTTTGAATACACCAGAGTGACGCTCTTTAGATTA
GATGTGGCGTGGATGTAGACTGTGGCAAATATAATATATCTAGATGGCTATTTTATCTGT
TTACAGAAAACATTTCAAATAACTATTGTAACTCACAATTTTCCCAAGAAGTCGATTTAA
ATAATAATTATATATGGTAAAGCTGTAAAAGCTTCAGTAATGTATGTTAGAAATGTACTG
TCACTTGATGGGGTCACTGATGGCCTCTAACTTTATATTGTCCTCCTTGGAGTGTCCTCT
GAATTATATGGCATTTATTACCAAACGGTGTATGTTTTTGATTCAATAAGTATCATAAAT
GAGTAAATGAAAAGTGCAAAGTTAATGTGTAACAATTCCAATAAACCATATAATAATATC
AAAAAAAAAAAAAAAAATCGGTACGCGTGCAACTTGGTGCACGTGGATGAAGTGAAACTT
CTCTTTGCGATATGTACTATTGTGGTTTTCTTAATTTTTCATCCTTAAATCAACTTTTGT
AATAGGGAATCCTGTGTTTTTTTTTTTTTTTTTTTTTA
(3938 bp)

- SilkBase 1999-2023 -