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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp33367_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
Transcript
Level		FPKM:55.56 TPM:96.90
ORF EntryO_BomoEE2030_complete:A_BomoEE_comp33367_c0_seq1
Sequence
(Nucleotide)
TTTTTTCCCAATTAAAATATTATATTTTATTGAAATAAACAAACTGAACTAAATCGGTCA
TAATCTATAAACAAGAGGGCAAAAACAAGGAATGGTATATTTCAATTTTTATGTTGAAGA
TTTCCGACTCATTTATAATGCATATAAACTAAACAAATCAATTAGGGCAGGCTTCAATGA
ACACGACAGCAGCTGTTCCTTCGTTTGGCATATTCATGTCCTCCCTTAGTGACTCCGCGT
GGACATGCATCAAGTGCCAGTTTCAGGTCATATCCGTTTAAAGTCGTCCAATAACTGGGA
AAAGTACCGTATCTTCAAGTGTCTTTCTTTTCACTGTCGCTCACTTTCGTCGGGAGCGTT
TCCTTTTCTTTCGCGAGACGCTGTTTACTAAACTTCCCCATGCCGGGCTGGTAAATCACG
AGACTGGGCCGATCCTTATTTCTTATTCTGCGTTCAGCGCGACGTTCGCCGTCACATTTT
TCTTTCTCTTCCGATCCTTCACGTTCCGAAGATTTTGGTCTTTCTTCGAAGGTTGTTTTC
TTTGAATCAGATTCATCATTGCTTGTGGCTTTATTTGAGTCAAGGCTATTTCTGCGTACA
TTACTCTTAGTCTCAACTTTGTCTGAATCTTTTGAGTTTCGTGTCGTTTCTTCTTTTGCT
TCAAGCTTTGTTTTTTTATCCATTCCATCAATAATCTTGGATAAGTCATCAGTTTTCACT
TGAGGCAGTTGAGTGAATGGTTTAATATCATTACTGAGTGCAGTACTTTTGGGACATAGA
GATATGAGCTTCGAAAGAGCATACTCTTTTTCAGATTTTGTAATTAAAACATTTTGTTTG
ATTCTCTCTTTCCTAGTGTCGCTGTATTTTTTACTCTTTTGCTCACGTGGAGATTCTTGT
ATCTTATTTTTTTCGCGTTTATCCTTTTTCTGCCCATCAAGATCATCTCCTACTTCGTCC
TCTTTTTCAATTCTATCGTTTTCAGATTTCTTCTTTTTATCAATTTTTAAATTAGGTTTA
CGTTCTTTGTATGATTTAGATTCGAATACCATCCCGTCGTCCAGTTTTGTTTGATCTTCT
TTAGAATCTTTCTTCTCTTTCTCAGATTCTCTGGTTTTAATTTTTCTTACTTCTGTATCC
TCATTATCTTCTTCCTTGATAGGACCTTCCTTTGTTTTTCGTTCAATTCTCATTTTTCTC
TTGTCATTATCGCGCCTACGACGTTCATCTCTACCTCTCTTGTCTAGTTTACGTGCGGCT
AGATATTCCAGCAAAGGTGTTGATTGTGTTTTTTTTTCACTAACATCATTTATTGGGTAA
GAATATTCTAGTTTAGGTTGGCTCTCAACCTCAGGATCTTTGTTCAGACTCTCGATAAAC
TCTTGATAAATTGGGTCACTCTCAAGTGTTCCACATTTAGGATCTTTCTTCTTTTTTTTC
TTTGAAATTCTTTGGAAGGGTGCATATTCAACTATGCCTACATATTCTCCACCTTTTTCA
TCTAAGAAAACATAACCGTCAAATTTATCTCGGAACAGAAAAATATCTTCCACGTTAACG
AAATTGATATACGCTCTAGAAAATAGGTTATTGCCCAAAGTCGGGTCCGGTTTGGCAAAA
TAAAAATAGTCATGCTCTGGAATAGGCGATACTTGCTCCAAAAACGTTTCCTCAGTCATC
GTGGGCGGTAAACGTCGAAGAATTATTTTTGTCAACGGACGATGTATCTTAGATTTCTTG
TCCTTGCTCTTGTTGATGAATGTCTTGGAACCCGAATCTGACTGTGAGTCTTTACCATCT
TGATCCTCAGTCATATTTCTTATGGAATTTTCGTTAGCTCAACAATATATTACTCAACAT
AATTTTATAATCATACGTCGTGTATAGCTTTTTTGACATTTTGGTCGAAGTCACAGGCTA
GTAAAAGAAACAAACGGTTCGAAGACACAGACTAGTTAAAATTATACCTTTTCTATGGAA
TTATAAACTCAAGTAAAAATCTCAATACTTTCAAAAGGTTGCAGGGAATGGATACTCCTT
AAAATTGCAAGACCATGACGTAAAGACTCTTCTCTGCAGAGAATGCACAAATCAGTATCT
TCCACGGCCAAAATAAATTTAATTCACTTATCACCATGGTTTAAGAAGTACCACGCGATT
TGAAAAAAAAAAATTGTGTTTTTTAAAAAACGTATTATATTACCCTAACTTAACCATCTC
AGTTGCCATTGATGAAATGGCTTTGTGAATAAATACCTGCGTCAACTTTTGAAAATCTTT
TGGCCTTAGACGATCACTAACAAAGAGCTATCAGGATCAGAAGGATCACAAAGCAGACAC
CAACGCAGAAGGAGATGCTTACGCGGGAGTGGTATTGGATTGGTCACACATTAAATTAAG
AAAGCCCGATACCCACCTA
(2419 bp)

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