SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp33060_c0_seq1
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
Transcript
Level		FPKM:24.57 TPM:42.85
ORF EntryO_BomoEE1904_complete:A_BomoEE_comp33060_c0_seq1
Sequence
(Nucleotide)
GATCTGATTGTCTATGGAATCACAGAACGAATCTTGTAAAAGATTAGGCCATTTCATAAA
ACAAATGTATAGTAACTCGCAGAAAATATCTTCAAAAACAGTTATATTTATTTCAGCTTT
GCATTTTATTTTAAATTGAGCATTGAAGCTCCTTACGGGTCCTTTGGAAAGGATTAATCT
TCTTCTCTAGCGAAGGGATAGCAGTCTTAGTTCTGCAATAGAAAAAAGATTTGCTTTGAG
AGGAGACGTAAGGTTGTCAATTAAGAAAAAGCTGACTTTGTTTCATTGCTATAGGCAAGT
TGGAACTATTGGCTCTCGGGTCTAGGATGTCAGTGCTGAATCAGAGTGGAGAAGAACAGG
TGGAATGTCCACTATGTATGGAACCCTTGGAAGTGGACGACCTCCACTTCTACCCGTGTA
CATGTGGATACCAAATATGTCGGTTTTGCTGGAATCGTATTCGAGAAGGCGAGAACGGCC
TTTGCCCAGCTTGTCGGAAGGCATACCCAGAAAACCCGGCAGACTTCATTCCTCTCAGTC
AAGAGCAGGTGGCAGCGATAAAGACGGAGAAGAAAGCCCGCGAGCAGAAACGTCGCAACA
AGACGCTAGAGTCGCGGCGTGCGCTCGCGAACGTTCGCGTCGTACAGAACAACCTCGTGT
TCGTCGTGGGCCTGCCCGTCAGACTCGCAGACCCGGAGATTTTAAAACGGCAAGAGTACT
TTGGAAAGTATGGCAAAATTCACAAAGTAGTTATAAACCAAAGTACGACATATGCAGGGT
CACAGGGTCCGTCCGCGTCGGCGTACGTGACGTACGTGTCGTCGGCGGACGCGCTGCGTG
CCATCCAGGGCGTCAACAACGTGACGCTCGACGGACGAGTGCTGAAGGGCTCGCTCGGCA
CCACCAAGTACTGCGCCAACTTCATGAAGAACCAGCCCTGTCCCAAGCCCGACTGTATGT
ACCTGCATGACCTAGGTGATCCGAAGGCGTCCTTCACGAAGGAAGAAATGCACGCCGGCC
TGCATCAGGTCTACGAGAGGAAGCTGCACAATCAGCTGCTCGCCTCGCAGCAACGGGATA
AAAACAACGAGGACAAGCAACTTAACGGTAATTCTAGTACGAATGCAGAAAAGAGCGGTT
CAAAAGATGGTAATCAATCGAACTATATACCGACGACAGTGGTCACATCGTCACATATAA
ACAACGTAGTCAATTCTAAATCTAAAGAGGAATGTGCGAATGGCAGTACCAGTTCGAGCA
GCAGTAGCAGTAGCAGGAGCGACAGCAGTGATAGCAGCAGCAGTAGTAGCGGTAGCAGTG
CCAACGGGAAGGAAGCCTGGCCCAGCCTCGGGTCCTCCCCTCCTTCAGATAGTCCCGCCA
GAAAACAAACGAGTCCGAAACCACAACAATTACACGTTAAGTCACAAGAAAACGGCATAT
CAGGGTCGTCCAGTCCCACGGAACTGCACACGGACACGGCACAGCAGCAGGCACAAACGA
GAAATGTTAAAGATACACACACCGACACAAACAGAACGAGAAATAAAGACACGAACGGCA
CGAGCACAACACACACAAAGAAAAGCAAAAACGAAAAGTCCAAACACAAGCCCGGCCACA
GCACCGACAGCGGACCCGCGGACCACGCGCCGCGCCCGCACTCCTCGGTCTTCGAGACAG
ACTCGCAACACAACTACATCTCCAATGACCTGGACGAATTAGAATCGGATCGACATAGCC
TGCTGGAGACCCACGACCTGCTGGAGAGCAGCGACCACAGCCTGCTGGACGACGACACCC
ACGACCTGCTCAACGACGCCGGCGACGTCCTCATGATGCAGAGGCACCGAGACATGCTGG
CCGGGCTCGTCGACGGCGGTCACCTGCTGCCGCAGCTCAAGGGGCCCGTGCTGAACGGCT
ACGGATTACTGGACAGAGATATTAGTTATGTTAACGATAGGCCAATTAGTCAAATGAACC
AGGGTTTGCTGGACCAGAAGGAGATGCTGTTGAGGGAACGAGAGCAGAGCGACATGCTGC
TGCGGCAGAGGGAGCTGCTGGCGCGGCAACACAACGTCATGGTCGAGCCTAAGCATTACA
TGCCCGCCTCCAGTATAGGAATGGAATCCGCTAGTGAACTATTAGGTGCTAATTACCACC
GGAGCCCCAGCATGGTGCCGGCGTTCGGCGCGCTGCCGCCCTACGCGCTGCCCCGGCCGC
AGGTGCTGCACGCGCCGCCCGCGCACGCCGCGCACGCCGCGCTGCTCAACGGGTTCGACG
CCGCACACAACAGTGAAGGTCGATATTTAGCGGAGAACATGGATAAGTTCTTCACGGACT
TCCACAAGGCGCAGCAGCTGCGGCTGCACGCGCGCGCCGGCGACGAGCGGCGCTACCAGC
TGCCGCGGAACGTGCTCAGCGCGGAGGCACTCGAGATGGAACACAAGCAGAGAATGAACA
ACGTACGTAGTGGCGAGCCGGCGGGCCGGGCGGCGGGCGATGGCGACGACGACTTAGACT
TTGATCCGTTTAAAGAGACACAGAAAGCGTTTGCGGAACTCATGGAGAATGAAATGATGC
AAAATGCCGTTTCGGGCGGTGACAACGCACGTCGATCCAGGTTAGCGCCGCCGGGCTTCA
GTCATGTCAATAACACGTACGGCGCCGGCGGGCCGCGCCTCCACGCCGCACAACAAGGGT
ATAACACGAACAGTCCGATGTTCTCGGACTGGACGCAGATGGACCCCGCGATCATGTCGA
CTTCGGTGAGCGGCGGCAGCGGCCTGTCGCAGCACCAGCACGACATGTTCGTGCGGTTCA
ACGCGCTGGGCGTGACGCAGGCGCCGCCCGCCCCGCCCGCCCAGCCCGCT
(2870 bp)

- SilkBase 1999-2023 -