SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp32871_c0_seq1
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		PREDICTED:_U3_small_nucleolar_ribonucleoprotein_protein_MPP10_isoform_X1_[Bombyx_mori]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0008380 P RNA splicing
GO:0010923 P negative regulation of phosphatase activity
GO:0030490 P maturation of SSU-rRNA
GO:0030529 C ribonucleoprotein complex
GO:0032040 C small-subunit processome
GO:0034457 C Mpp10 complex
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
Transcript
Level		FPKM:40.26 TPM:70.22
ORF EntryO_BomoEE1844_5prime_partial:A_BomoEE_comp32871_c0_seq1
Sequence
(Nucleotide)
TTTTTGTTGGTTGTATTGGTCCCATGGATACCAAGAGGTATAAAATATACATTGGCCCTT
TTAAAACTATAGATGTGCACCATTTACTATGAACAGAACATTCTGATTTGTAATAACATT
TTAGATCAAATTATTTTTTGGCGAGCATGCGAGCAATGAATTAATTATTGTAAGGTCATC
ACCCTCTTTACATTTTTAATGCCATATTTGATTCCAAGATTATATTTTTGCCGTGACAGA
TTTCTTTTAAATAGCCTATGTTTTCTTGGCCTTTCAATGGACGAATGAAAAAATACAAAA
ATGTCAAATAGACCAATGTGTCATTTAGTTGCCAATGCTACCATTAGATCAAACGTCAAA
ATAATGCACCGCGTGTGTTTTTTGGTTTTGCAGCGATTTGTTTTCTTTGGTAGTTTCAGT
AATTCCGTATCTTAAATTTTACATGACACATTAAAGATAAAATTATCATATTTATTACAG
TAAAATGGCTTGCATAGATTTGGAAGGTATACTTAATAAATTCAACAGTTACACTGATAA
ACCAGTAAAATTTTTGTCTGTGCAAAAAGAGTTGAAAGAGGACCTAAAAAGGTTTGTAAA
ATCGGTATACGATTACACGAAATCTCAGGAGAAGAGCGATAAGAAGAAGAAGAGTGGGGC
CTTAAAGGAATTAATTGTGGAAGATTTTGATGAGGAGCAGATATGGCAACAGATAGAGCT
GCAGAACTCCCAACGCTGGGACCAGATAGTGTGGGAGGTGGCCAACTCTATGAGCGCAAA
TAACGAATTAGTATTTCCCATAAAAGTTGCTAAAGAAAAACCCAAGGAGATCTTACCTCA
TGGTGTTGAACCTATGGTAGAAGATGATGGAGAAAAAGTATCTGAGAATATTGAACTTGA
GCATGGCAGATCTCAACGAGTTCAAAGTGATGTACCAAAAAAGAAAACCAGGCCTTCGCA
GGTGGATGACAAGTTTTTCAAACTTTCCGAAATGGAAGAGTTTTTATTGAAAGAAGAAAA
AAAACAAACAAATAGAACCAAAGGTGATCGTGACAGTGATGAGGAGTCTATAGATTTCTT
CGAAGATGACAATGAGGAGGAGGAAGATGAAAATGTCATGTATAATGACTTTTTTGATCA
AGATGGTGCTGAAGATGGGGACTATGATATGGACCAGGAAATAGATGATTCAGTTGAAGA
TGAAGAAGAGGAGGTTACAGAGCAGTCAAATAAAAAAAAGCAAGTCCGATTCTCACAACC
ATCTATTGATGATTCAGATGACAATTCAGTTGATAGTAACAAAAATAATAAAGTAAATAG
TAAAACAATTGAAGAAAAACAGTCTGAGTTTGAGCAACGCCAGCAAAGACTAAAACAACA
CATTCAACGACTAGAGGAAAAGACTTTGAAAGAAGCCTCTTGGCAACTCAAAGGTGAAGT
GGATGCATCGAAACGTCCTCAAAACTCACTTCTTCAAGAAGTTGTGGATTTTGATTTAAC
AACACGTCCAGCTCCAATTATAACTGAACAGACCACAGTTTCTTTAGAAGACATAATTAA
ACGTAGAATCAAAGATAAAGCTTGGGATGATGTTGTTAAAAAAGAAAAGCCAGTTGATGA
CCAACTGGCATTCCGAAAGAAGGAAATTCTAGATCATTCAAAGAGCAAGCTAAGCTTAGC
TCAAGTCTATGAGGCGGAGTACTTAAAACAGAAACAGGCAGCATCAGGAGAGATTGTAGA
AGAAAAAGAACCAGAAGCACATAAAGAAATTCGAGAAGCCATGTCACAGTTATTCTCAAA
ATTAGATGCACTGAGTCATTATCACTACACACCGAAAGCTGTACAGCCTGAAGTGACAAT
TGTATCAAATACTCCAGCAATATCGATGGAGGAGGTGGCTCCAGTAGCTACCAGTGATGC
AGCGCTATTGGCTCCCGAAGAAATTAAGAGAAAACAGAAAGGAGATCTTATTAGCAAAGA
AGAGAGAACAAAGACAGACAAAAATAGAGAAAGAAGGAAAAAGAAGAAATTGCAGAAGAA
AAAAGGACAGGTTACAAAAGTAACAGACAGCAGGAATACTACAAAGAGTGTAGAAGTCAG
TGACAAATCAGTGAAGACTTCAAAAGCATTCTTTGAGCAGTTAAATGATAACACCAAGAG
CTTGATTAAGAAAAATAAATTAATTAAGAATAAGGGACAATAAAATATTTTTGGCTTGTC
AAAAAAAAAA
(2230 bp)

- SilkBase 1999-2023 -