SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoEE_comp32262_c0_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_SIAH1-like_[Amyelois_transitella]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006915 P apoptotic process
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008022 F protein C-terminus binding
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0030163 P protein catabolic process
GO:0030877 C beta-catenin destruction complex
GO:0031648 P protein destabilization
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042802 F identical protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051402 P neuron apoptotic process
GO:0061630 F ubiquitin protein ligase activity
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:9.68 TPM:16.88
ORF EntryO_BomoEE1618_complete:A_BomoEE_comp32262_c0_seq1
Sequence
(Nucleotide)
ATATTAAGTGTATAATCTATGGTCACCTGCTAATCCTGCTATCTTGACATTCATGCGAGT
TTTGTTCGATTGGTCGTCATTGAGTTTTACGACGATTATCGTCCTTTTGTAATGAGCTAG
AACGTTCGCATAGCTATTAACTTTTACCTTTTTTATTTAGTCTTTCTATACAGTACACGT
AATTATGCAGTAAAATAAAAATTGCCGAACTCTTCGCAAACACAAGTTGTTATCATTCGC
CTAGATTCTCATGGAGATTAGCCCACATATATCACGACGTACATAACAGTAAGAGCCATC
CGCCTCGGTAACTGTAATGGAAATCTACTTCAACTCGACCAGCAGACGGAAGAAATCCAC
CGTGGAAGGCTATAAGTGAAGTGAGCGGTGCGTGTTTAGGAAGTAATCGTGGAGGACTGG
GAGATCGTCGACGGACGTGATCTATGTGCGCGTAACGGTGACATGAGCACGAACATCAAG
CGGCGTGGAGCTAGTGGGTCCAGTTGTTCAGTGCCCGGAGTGCCGGCCCTCGTGAACGCG
CCCACCGCCATGTCTGCCGACCTCGCCTCGCTGTTTGAGTGTCCCGTTTGCTTCGACTAT
GTGCTGCCCCCCATCCTACAGTGTCAGAGTGGGCACCTGGTGTGCTCTAGCTGCCGTCCC
AAGCTGTCCTGCTGCCCGACGTGTCGCGGGCCCCTCGGAAATATTCGCAACCTTGCAATG
GAAAAGGTTGCCAGTAATGTTATGTTCCCCTGTAAACATTCTAACACGGGCTGTACTGTG
ACTCTTGTGCACACGGAGAAAGCTGAACATGAAGAAGCTTGTGAATTCAGGCCGTACTCT
TGTCCTTGTCCCGGGGCATCCTGCAAGTGGCAAGGTGGTCTTGATCAAGTAATGCCGCAT
CTAATGATGTCTCACAAAAGTATCACAACACTCCAAGGAGAAGATATAGTGTTCTTAGCT
ACGGACATCAATCTGCCCGGTGCGGTGGACTGGGTGATGATGCAGTCATGCTTCAATCAT
CATTTTATGTTAGTTTTAGAAAAACAAGAAAAATTTGATGGTCACCAGCAGTTCTTTGCA
ATTGTGCAACTTATAGGATCTCGTAAAGAAGCTGAAAACTTTGCATACCGATTGGAGTTG
AACGGTCACAGGCGTCGGCTAACGTGGGAGGCAATGCCTAGATCCATTCACGAAGGAGTG
TCATCGGCCATCATGAACTCAGACTGCCTGGTGTTTGATACATCACTTGCACAATTATTT
GCAGATAATGGCAACCTTGGTATAAATGTCACAATATCTATTGCCTAACCAATGTTTCTT
TTTACAATTTATGTGAGCTAAAACTCTTGTATTAGACTCATAATTACGCAGTGTGTTACA
CGAAACATGACATAAAAGTTGGAACAAATTTGCAAATTTTAAAATGTAATTTTATTTAGT
TTTCTTTTTTTTTTTCTAAATGTAAATAATCTTTGTCCATAGATAAATGTAATCGTTAAT
TTTCTAAATCATATTATTTTATGATTTACTTACCATCTCACGTATATATGACTTGTACTA
TAATTTAAATATAATTGTTCAAATGAAAGTAAGCCAAAAAAATGTTTTTTTTTTCTTTTC
AACTTTTGTAAATGTGTGTTCAATATAGTTGTAAGTAGCAGAAGTGATTATTTCTTGCTA
ATTCAATAATTGCCTTGTGAACATAGTTTATAACAAATTATGACGAATGATGATCGCAAG
AAGGGATTACTTAAATTCTGTAAAATGAACAAATTTGTATTTTAAATGCATGAAAAAATT
TTTAGTGAATAAAATTTATAATAGAAATGTGATGTTGCTTTACAAGTCTACCCAATTATG
CAGAAACTCGATTAACAAGAATTTACAAAACCAACAAAAAAGTTCTTAAGCGAAGAATTT
TAGACACTGGTTTGACATTTAAAAGTAATTCAGTGTTACCTTTCAATTATAAATGATTAC
GAAAAAGGTACGAATCGCGCAGATAAGTTATGACAAAAAATCGTTTTTTTTTTTTCAATT
AAAAAAATGTACATACTCAATACTTTTTTCTAAATAAATGCTGTGTAGTCTGATATTAAT
TTGTATTTTATGTAGATTATATCAAAAATACGATTTGACCTCTGATTCATTTTCATTTTA
GCTGGATGCTGGTCGGATCTTTTCTGCATAACAGGGTCGAATGGTAAACAGTGCTCGAAC
CAACTATCACGGTCAACGCGTGACCGAAACAAACGTACCTATTATTTAAACAAATAAAAA
ATACGTTGAACAAAATTGAATGCCTTAGGACTGGTTATAGTTTGAACTGGATCTTGCCCA
CGGTACTTATGATTACAATAATATTCTTAGATAGAAAAGATTAAAGACGTAGGTTGAAAG
TAGATCATAACTTTTCGAAGATACGGCTTAGTTTAGCCTGAGTGTATGCTGGCGCGTATA
ACAAAACCTTTGGATATGTAAATATGAATCCGAAAAAGTTATTTTTTCATAACACTCATT
ATTCATTATTAGATTCATAATGATAAACATAAATTTCATTAGTTAAAAGAAGACCATGTT
AATTTTAAACAATTAATTGGAGAAATATACTCTGACATTCAATAGCAATAATTATGTAAC
GAACGGTCACCAAATCAACGTATTGTTTTTTGAGTTGGCAGCATGTACTTTGTTATGTTT
AATGGCTTTGATTACCACTTAACGTCAGACTGCCCGCGAGCTTCTTTCCTCATCCGCGAC
AATAACAACATTACACGCTCGACTGCGGTAAGCCGTGTTTTGTTTTCATTGTCCATAACA
TAAATACAAATAGCATATAATAAAGAGTTTTAATAAGTCACTTTCAACTAGATTCGGAAT
ATATGTTTAATAATTAAAAAATTAATTTAAAACAGGTTTTACTTTGCTTCGAGCAATAAT
AGTTCTCTGGTGGTCACTCGGCGGGTAATCAAATTGCCCACCGACAAAACCCCAAATTCA
GACCCCAAATTTTCATATTATTGAAATCATTGCCCAGACCGGGATTCTAACCTGGATCTC
GTCGTCTCAATAATCACTCACTATTACATTTAACCTTAATATATTAAATCTATCTAGCGA
CAAAACAATAAATTTCGCTTTAGTCAAATATTTTACACAAAAGGTTCAGCGAAATACATG
CTCAAATTTTTTAAGATTGATTTTTTAAAACGTGGGCGTTAAGTACAATATTGTAAATGC
ATTGCCTACAAATTGTTGCTCATTTCTGTAATAACTTACTTTTTTAATCATGCAGAAATG
TCACCGGTCACGTTACTTCTAATTTAAAGTTTGAATTGTCGCCATTTTGGAAAACTAAAA
AGGTTGTTTTATTTTTCCACAACACGCGCGCAATGGTGAAAAATGACTGTTATCTTGTAT
CTCATAAGATAAATCTCGTCAAGTAAAATAAAAATTATAATTGAAATAAATTTTTGTAAT
GTAATCAAAAAAAA
(3494 bp)

- SilkBase 1999-2023 -