SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c30475_g1_i1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
Transcript
Level		FPKM:17.47 TPM:13.40
ORF EntryO_BomoASG19220_complete:A_BomoASG_c30475_g1_i1
Sequence
(Nucleotide)
TGTAAATGATACATAGCCTTTTTATTTTTCTTATTTTTTAGAAATAAAAATTAACAAAGC
TTAGCGTATTATTTAGATATAAGATTATAGTAGAATAGTAGTTTAGTTTAGTTTAGTCAT
GTCAGACTTTCTGGAATCTGAAGCAGAGGAGAGCGAGTTGGATTCTGAGGCAGAAGAGCA
GCCGGCAGAACGTAAAAAACATAAACGGAAAGCAGTTCAAAGTGACGACGAAGACGAAGA
AGAAGAAGATGACGAGGAACGTCTCCGAGAAGAACTTAAAGATTTGATAGATGATGCACC
AATAGAAGAATCAGGAAGTGATGGCGAGGACTCTGATGCTAGTGTAGGACCAAAGAAAAG
AAAAAAAAGTGATGATGAATTGGATGATCGGCTTGAAGATGAAGATTATGATCTCATTGA
AGAAAATCTTGGTGTAAAAGTTGCAAGAAACAAATTTAAACGTCTACGTCGACTGGAAGA
TGACGACAGTGACAATGAAGGGGCAGATGATCCTGACCTGGAAAGAGAAGTTATTGCAGA
GAAATTGTTTGTTGGTGGTTCTGATGAGGAAGATGAGAATCGTTCCGATTCAGCCGCACC
ACGTGGTGATGTAGAATATGATGATGATAATGAAGAGTTGGAATCAGATGCTGATGATTT
TATTGTTGATGATGATGGTAGACCAATAGCTGAACGCAAAAAGAAACGCAAACCTATATT
TACTGATGCGTCACTGCAAGAAGGTCAAGATATATTCGGTGTAGATTTTGACTATGATGA
ATTTGAAAAATATGGCGAAGAAGATTACGAGGATGAAGACGAAGAGGATCTGGATGAATA
TATTGAAGATGATGAAGAGGAAGGTGAAAGACGTAGGACAAAGAAGGGTAAAGCTAAAAG
GCCAAGCAAGAAGTCGATCTTCGAAATATACGAACCCAGTGAATTGAAGAGAAGTCACTT
TACTGATTTGGATAATGAGATACGTAAAACTGATGTTCCTGAACGTATGCAAACTCGTGA
AGTGCCTATAACTCCAGTGGAGGAAGGCAGTAATGAATTGGAAGAAGAGGCAGAATGGAT
TTACAAGCAGGCTTTCTTGAAGCCTTCAGTTTCCAAAGCTGATGCACAGGACGCCAGGGA
GAGAACTAGACGAGGTTCAAGTACAATAACGAAGATTCGTCAAGCGCTTGACTTCATGCG
AAATCAGACCTTAGAAGTGCCTTTCATAGCGTTCTACCGTAAGGAATACGTGGAGCCAGA
ACTCAGTATCAACGATCTGTGGAAAGTTTATAAATATGATGCTAAGTGGTGTCAGCTCAA
ACAACGGAAAGAGAATTTGCTGAAGCTATTCGAGAACATGCGTGATTATCAATTGGACAA
AGTAATGGAGAATCCCGATGCTCCCATACCTGAAAACATGAGACTCGTCAAAGATGAAGA
TATAGAAAGATTGAAATCTGTACAAACTCCTGAAGAGCTGCGGGACGTACACGCTCATTT
CCTGTTGTACTATTCCTGTGAACTTCCCGAAATGCAGAGAGTACAACGCATCAAGGAACG
GAAGAAGGAACTTGAGGAACGAAAAAAACTTGCTCGGGAAGAGGCCGAAAAGAACGGGGA
AGATGCAGAGGAAGCAGCAGCAGCCATTGAAGCTATAGAACTTGACGAAGAAGACCTAAC
GGACATCAAATACGCAGCCAAATCGGGACCTTATGAACTGTGCAGGAAGGCTGGTATCGA
GCCCCTCGTTAAGAAGTTTGGTTTAACTCCGGAACAGTTTGCCGAGAACGTTCGCGACAA
CTACCAGCGGCACGAGGTGGAACAGCAGCCCGTGGCGCCGCTCGAAGCCGCCGCTGAATA
CGTGGGTAACATCGGGTCGGCGGCGGAGGTGGTGCGGCGCGCGGTGTACATGTGCGGCGT
GCAGCTCGCGCGGGAGCCGCTGCTGCGGGCCACGCTGCGGGACGCGCTGCGGGAGCGGGC
CACCGTCTCCATCAAGCCGACCGCCAAGGGCATCAAGGAGATCGACGAGAACCACGCCTG
CTACAGCCTCAAATATTTAAAGAAAAAACCAGTTCGAGACATTACCGGTGAACAGTTTCT
TAAATTAACAATGGCAGCCGAAGACAAACTGTTAGTGGTCACCATCAGTGAGCAGATCGA
GGGCAACACCAGCCCTAGTTACTTAGAGGAATTGAAACAGCTCTATCAAAAGGACGAATT
TGCTGCCACAGTACAAGCGTGGAATGAACTTCGCTCAGAGGCGGTCACCATTGCCTTGAC
CAAGATCGTCATGCCCGAGTTGAGAAGAGAACTGCACGCTGTGCTCTTACAGGAATCTAA
AGATTATGTTCTCAAGTGTTGTCGTCGGAGACTGTACGACTGGTTGAAAGTAGCTCCGTA
CGAGTCTAGAATATCTGATGATGATGATGAGTGGGACGCCTCCAATGGTGTGCGAGTAAT
GTCGGTGGCGTACGTGCCGGACCGCGCGCACAGTGCGTTCGCGTGCATCGTGGGCCCGGG
CGGCGAGGTGGCCGACCATCTGCGGCTGCCGCACCTGCTGTACCGGCGGAACGCCTGGGA
CGCGCTTGAGCGCCGCAACAAGGACGCCGATATGACCGCTCTCAGGAGGTTCATTTGTCG
CAAGAAGCCGCACGTGATCGTCATCGGCGGCGAGTCCCGGGAAGCGCTCAATGTTAAAGC
CGACATCTCGGACTGCGTTCAGCAGCTGGTGGAGGACGAGCAGTTCCCGAGGATACCTAT
CGAGATAGCCGACAACCACTTCAGCAAGATTTACAGCAACAGCATACGAGGAAGGAACGA
TTTCCGTGAATACCCAGACATCCTGCGTCAAGCCATTTGTCAAGGTCGTCTGCTGCAGGA
TCCGCTGATGGAAATATCGCAGCTGTGCGGCCCGGACGAGGAAATACTGTGCCTCCGATA
CCATCCGCTGCAGGATCAAATCGCCAAGGACGATCTGCTCGAGGGTATAGAACTGGAATT
CGTGAACAGGGTCAACGAAGTGGGCGTCGACGTCAACGAGGCGGTGCTGACGGGCCGAGG
GACCGAGCTGCTGCAGTACGTGTGCGGCCTCGGCCCGAGGAAGGCGCAGGCCCTGATAAA
ACTCTTCAAGCAGACCAACCAGAAGCTGGAGAACAGAACGCAGTTGGTCACGGTCTGTCA
CATGGGCCCAAAAGTCTTCATAAACTGTTCAGGCTTTATCAGGATAGACACGAACAGCCT
CGGCGACAGTACCGAGGCGTACATTGAAGTGCTGGACGGGTCCAGAGTGCACCCGGAGAC
GTACGAGTGGGCCCGCAAGATGGCGGTCGACGCTTTGGAGTACGAAGACGAGGACGCCAA
CCCGGCGGGCGCTCTGGAGGAAATCCTCGAGGCTCCAGAGAGACTTAAAGACCTGGACTT
GGACGCGTTCGCTGAAGAGCTGGAACGTCAAGGATTCGGTAATAAGAGCATAACCCTGTA
CGATATTCGAGCGGAATTGAACTCTAGGTACAAGGATCTTAGGGTGTCGTATCGTTCGCC
AACGCCCGAGGAACTGTTCGACATTTTAACAAAAGAGTCACCGGATACGTTTTACGTGGG
GAAAATGGTCTTAGCGTCTGTGATCGGCATCACGCACAGGAAACCGCAGCGGGAGATGCT
GGACCAGGCGACGCCCGTTAGAAACGACGAGACGGGGCTGTGGCAGTGTCCGTTTTGCTT
CAAGAATGATTTTCCTGAGCTGTCTGAAGTATGGAGCCATTTCGACGCGGGTGCGTGCCC
GGGCCAGGCGACCGGCGTCCGGATCCGGCTGGACAACGGCCTGTCCGGTTACATACACAT
CAAGAACCTGTCGGACCGCCACGTCACGGATCCGACCGAGAGGGTCCGCATCGGGCAGAC
CGTGCACTGCCGGGTCATCAAGATCGACGTCGAACGCTTCTCCGTGGACTGCACTTCAAA
GTCTTCGGACTTGTTGGATAAGAATAATGAATGGAAACCTCCAAAGGACCCTTACTACGA
CCAAGAAACGGAAGACAAAGATATACGCAAAGAAAAAGATGCAAAACAGAACAAGGATCG
CATGCAGTACGTAAAACGCGTGATAGTACATCCGGCATTCCACAATATCTCGTTTGCGGA
GGCTGAAAAGCTTATGGACAAAATGGCACAGGGAGAGGTCATCGTGAGGCCTAGTAGTAA
GGGTTCTGACCATTTGACCGTAACGTGGAAAGTCACTGATGGAATTTATCAACACATCGA
CGTGAGGGAGGAAGGCAAAGAAAATGCTTTCTCATTAGGTCGAAGTCTTTGGATACAGGG
ATCCGAATTTGAGGATTTGGATGAAATAATAGCTCGTCACGTGACACCGATGGCGGGGCA
CGCCCGAGATCTCATTGCGTACAAATACTATAAGCCTCTCGGCGGGATCAGGGATAAAGC
TGAAGAAATACTCAAGGAGGAGAAAGCCAAAAACCCTAACAAAATTCATTACGTTATCTC
GGCCTCGAAGAACTATCCCGGGAGATTTCTACTGTCCTATTTGCCGCGAGCGCGTTGTAC
GCACGAGTACGTGTCCGTGTCGCCGGACGGGTACAAGTTCCGGCAGCGGATGTTCGACTC
TCTTTCGGGATTGCTCAAATGGTTCAAAGAACATTTCCGGGAGCCGCCGCCATCCGGCAC
GCCGGCACAGCGCGCCGCCGCAGCTCGCACGCCGCACGGCGCAGCCTCCGCTTTATATCA
GACTCCCGCCGCCCACACGCCGGCCTTCCACACACCCGCGCACACGCCAGGACCTGCCTA
TATTAACACCCCCTACACACCATCCGCGCAAACGCCCTACATGACGCCCTTCGCGTCCAC
GCCGCGGCAGACAGATTTCTTGACGCCTGCGGCACCGCGTCACAAGGCGGCACCGGCGGC
CGCCTACACCGAGCCCGCCGACTGGCAGAAGGCAGCTGAAGACTGGGTGCGGCACCGCGG
CGGGTCGGCTCGCGACACCCCGCGCCGTACCCCGCGACACGACGCGCGCTCCACCCCGCG
GCACGACGCCCGCTCCACGCCGCGCCAGGACGCGCGCTCCACGCCGCGACAAGACGTCCG
CTCGACGCCGCGACAAGACGTCCGCACGACGCCGCGTTACGACGCGCGCTCGACGCCGCA
CTCGCAGATGTACACGCCGACGCACACGCCGCACACGCCGCGCTCGTCCCGCACGCACTC
GGCGCGCTCCACGCCGCACACCAACACGTCGCCGCGCTCCATGTCGCTCGGCGACGCGAC
TCCACTCTACGACGAAAATTGAACCCTCAATCCACTTATATTTTTGGACCGCAACGTACT
GAATTAATTATTCTTATTACGGCTCCCCTTATAGTGGGCTCTCGTCCTCTCGTGTAGTGG
AATCCTCGATACGGGCTATCGCTTTGGCTTCGTTTTGCTTTTATTCAGTTTCGCGAGACA
GGTCGATCGACGTGTTTTGATAATTTCAAATAGTTTAAGATCCTAATTTTTTAAATAAAA
TCACACAATGTTACTTACTTACTACCTACTTGAAACTAAAGCCATTCAACGAACCAAGAA
AAAAAACCGTCAAATTGTCGTGTTCGTGGGAACTCAATTAGGGCCTTAAGTATTTAAGTA
CATTTAGGAACGATTATATAAAATCAACGGAAAATATTGTTTAAAAATATTTATAATAAT
GAAATAGCTCTTCA
(5714 bp)

- SilkBase 1999-2023 -