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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c30392_g1_i2
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		mismatch_repair_endonuclease_PMS2_isoform_X2_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:3.26 TPM:2.50
ORF EntryO_BomoASG18973_5prime_partial:A_BomoASG_c30392_g1_i2
Sequence
(Nucleotide)
TCATAAATGAAAATACTGCTCATAAAATTTGTTCGGGACAGGTAGTTTTGAACTTGGCTG
TAGCAGTTAAGGAATTAGTGGAAAATTCACTGGATGCAGGAGCTACCAAAATTGATATTA
GATGCAAGAATTATGGTATGGATAGCATTGAAGTTTCAGACAATGGTTCAGGAGTTAATG
AAGATAATTTTGCAGCATTGACCTTAAAATATCATACATCAAAATTGAGTGACTACTCAG
ATTTGCTTGGAGTATCAAGTTTTGGTTTTAGAGGTGAAGCTCTTAGTTCACTTTGTGCTT
TGGCAAATCTGGCTGTAACTACCAGGCATAAAAATTCCAATTATGCAATTAAAATAGAAT
ACGATCTTAAAGGTAACATTGTAAAGACAACACCATGTTCTAGGCAAATTGGAACAACCG
TTACTTGTACAAATCTGTTTCATTCCTTGCCAGTGAGACAAAAGGAATTTCATAACAATG
TAAAAAGAGAATTCAACAAAATGACGCATTTACTATATGCATACTGTTTAATTTCAATAG
GTGTTAAAATTACGTGTACGAATCAGGCATCTTCCAATACAAAATCTGTAGTAGTTGAAA
CGCATGGCTCCTCGTATAAAGACAACATTGCCAGTATATTTGGTCTTAAACAACTACAGA
CAATAATCGAAATAAAACCCGAATACACTCAAAACATAAAAGATAATATTTTTAAAGGTC
TATCTAGTGAAGTAGCTCATGATCAACAAAGTTTTGTCATCGAAGATGTGGACATTAACC
TATCAGAAGATTCCAACGACAACGAGTCTGAAGCTATTGCAAAAGATGAAATTAAATCAC
AAGGATATAAAAACATTGTTAAACCGTTTGAATTTATAGGTTTTGTATCTTCGTGTGAAC
ATGGGCGTGGTAGATCTAGTACAGACAGACAGTTCTTCTTCGTAAATAACAGGCCTTGTG
AACCAATTAAAATAACTAAACTCATAAATGAAGTTTACAGACAATACAATCCAAACCAAT
ATCCTTTTGTTTTTCTGAATGTTAATGTTGAAAGATCGTCTGTAGACATAAATCTAACGC
CGGATAAAAGAAAATTATTTTTAACCAAAGAGAAAAATATATTGGACGTTTTAAAAGTTT
CTTTACTTAAGTTATTTGAAAGTATACCGCGGACATTGAAAGTAGACTCTTCCCAAAATG
TTTCTATTTCGAAAGATCATAAACCAGAATTAGATCAACCGAGAATTTTTACGTCTTTCC
TGCAACAATTCGATAAAAAATCAAAGCTTTGTGATCCTATTTCAAAAAGGGAAGATTTAA
ATAAAGTTGATTTAAAAAGAAAATCTACAGCAATTACTGACTACATTACTATGAAAAGTA
AAAGACTAGAACAACCCTGTTCAAGTATTAATGAATCAAAATTGATGTCCAGTGATATTA
ATACCAATGAATTGCTTGATTCAGAAGAGATCCCTCAAGTCCCTATGAAATCTGAGGGGC
GCAGTGATGACAAAAATGTTACAGAATTAATACCTCGACCAACAAATATAGAAACGCCGA
TAATTATATCTGACCAAATTAAATCTGAAGAAACTGAAATCACAGAGGAAAAAGAGATTA
TATATTTAGACTATTGCAACGAAATGCCAAATACACAGATAAAACAGTTATCAGAACAAG
TTGTAGAGCAAACTTATACCATTAACTGCAAAACAAAAACAAAACCTAAGATACATTTAC
CACCGGGATCTAAAAAAACCTCCGAAAGCTACAATAAAGTTTTAACGGTGACAGACAAAG
AAGACTTAGGTAAGAACCACAGGAGATCAGTAATTTTAAAAACTTCTTTGCAGCATGTCC
AGGCTTTAACAGAAATTTATAATAGAAATAATGAAAGGATATTACCTACTAAAGTGAAAT
TTAAAAGCGCCATTAATCCAGTATTCAATAAAAAATGTGAAGAAGAATTGATACGAGAAA
TATCTAAGGATTCATTTAAGAAGATGCATATTGTGGGGCAATTTAATTTGGGTTTCATAA
TAACACAACTAGAAGATGATCTTTTTGTAATAGACCAACATGCTACTGATGAGATTTATA
ATTTTGAAACCTTACAGCGTACAACAGAACTAACCAGTCAAAAATTGGTGATCCCACAAC
AACTAGAGTTAACAGGTGTAAACGAAGAAATACTAATGGACAACATAGATATTTTCAAAA
AGAACGGTTTTACATTTGAAGTAAATAAGGAGGCATTGCCAACGAAACGTGTAAAACTTT
TGACTATACCAATGTCGAAAAATTGGTTATTTGGAAAGGAAGATATCGAAGAAATGCTCT
TTATGTTAAGGGAAGCTCCGACCGAACATTGCAGGCCGAGTAGAGTAAGAGCAATGTTCG
CATCGAGAGCTTGCAGAAAGTCTGTCATGATTGGCACAGCTTTGAAAAAATCCGACATGA
GAACGCTGGTCGACCATATGGCAGAAATTGATAAGCCGTGGAACTGTCCACATGGACGCC
CCACCATAAGGCATTTGGTCAACTTAGCTATGGTCCAAACTGAGTACAGCAGTG
(2574 bp)

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