SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c30053_g1_i1
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		DNA_excision_repair_protein_ERCC-1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000109 C nucleotide-excision repair complex
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000720 P pyrimidine dimer repair by nucleotide-excision repair
GO:0000784 C chromosome, telomeric region
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001302 P obsolete replicative cell aging
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006312 P mitotic recombination
GO:0006949 P syncytium formation
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0007584 P response to nutrient
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0008584 P male gonad development
GO:0009650 P UV protection
GO:0009744 P response to sucrose
GO:0010165 P response to X-ray
GO:0010259 P multicellular organism aging
GO:0016787 F hydrolase activity
GO:0019904 F protein domain specific binding
GO:0032205 P negative regulation of telomere maintenance
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035166 P post-embryonic hemopoiesis
GO:0035264 P multicellular organism growth
GO:0036297 P interstrand cross-link repair
GO:0043566 F DNA binding
GO:0045190 P isotype switching
GO:0048468 P cell development
GO:0048477 P oogenesis
GO:0048568 P embryonic organ development
GO:0051276 P chromosome organization
GO:0070522 C ERCC4-ERCC1 complex
GO:0070911 P global genome nucleotide-excision repair
GO:0090656 P t-circle formation
GO:1904431 P positive regulation of t-circle formation
Transcript
Level		FPKM:15.31 TPM:11.75
ORF EntryO_BomoASG18017_5prime_partial:A_BomoASG_c30053_g1_i1
Sequence
(Nucleotide)
CATCTATATTATATGTATAATCTATGGATTCACAGAAACTGCGATTATTGCTGATTATTA
CAATAAAATGAAAATGGAAATAGAGGATGGTTTTGATGAATTGTTGGCCGAAATTAGTGA
ACCATCATCATCAAAGAAAATTAAAGTAGATGAAATTTCTGCTCAAGCAGGAACATCTGA
CGAAGCTACCATAAAACCAAGATCATCAAAGACACACTGTGTTCTAGTAAATAAAAACCA
GAGAGGCAATCCTCTTCTCAAACACATAACCAGCGTGCCTTGGGAATATGATGATATAGT
GCCTGATTATGAGGTTGGAAAAACAATATGCTTACTATTCCTCTCATTAAGATATCACAA
CTTGAATCCAGATTACATACACAACAGATTGAAGGAGCTAGGCAAGAAGTATGATTTGAG
AGTTTTGCTAGTACAGGTTGATTTGAAAGATCCACATGCATCTTTAAAAAATTTAACACG
AATATGCCTGCTGACTGATATAACTTTAATGTTAGCTTGGAACCCAGAGGAAGCAGCTAA
AGTTGTTGAAAACTATAAAATTTACGAAAACAAACCGCCAGACAGAATTATGGAAAAAAT
TGAGAATGATCCTCATCAGAAGATTATCAATGCATTGTCGTCAATCAAACCTGTCAACAA
AACTGATGCCATGACACTAATCAAAACATTTGGCACCCTAGAGAATATTATTAAAGTTTC
AGAGTCTAGATTAGCAGAATGCCCTGGGTTTGGTATAACAAAAGCAAAAAAACTTTACAA
GGCATTGCATGAACCATTTTTAAAGAAGGGTCAAACAAAAGATAAAAAAGATGAATTTCC
TGATGAAGATTTGACACTTGAAGAATTAGAGAAAATTGTAAATGAAAACCAAGATATATC
CTGAGATACTATGAATAATACTGAAGAACTAAGGGCAAAAGATAAACATGCCACTGAAGT
TCATACAAATACAGTGTACACAATTAAACCAGGTGTAAACATGATGCTTGCAAGCAATAA
TAAACTAATTCTACAGTGAAGTATTACTGCAAAAAATTGAAACTTAACTGTCCATAGTAC
TAATAGTTGTTGCTAATAGCTGGTCCTGCAAGTTACATTGTTACGTCTTTATTAATATTA
GAGTGAGTTTTAATATGAGTCCCGATCTCTAGACCAGGGTTGTCCAAACTACATAGGTAC
CTTTGCGGGATCATTAAATTGACTGCAAAGGCTGGATGGCCGCAGAAAAAAGAAAATGAT
GTCATGGGAATGAAATGTTACAAGAGTAAAGATAAATTATATCAAATATTGATTATATGT
TTTGAC
(1326 bp)

- SilkBase 1999-2023 -