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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29927_g1_i3
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_pre-mRNA-processing_factor_6_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.66 TPM:4.34
ORF EntryO_BomoASG17622_complete:A_BomoASG_c29927_g1_i3
Sequence
(Nucleotide)
CGATCTAAGATATCGACAGGAGAGGCCAAAAATTCAACAGCAATTCTCTGACTTGAAACG
TGAACTAAAAACAGTTTCTGAAGATGAATGGGCGGCGATCCCCGAAGTAGGCGATGCTCG
TAATAGGAAACAGCGCAACCCTCGCGCCGAGAAGTTTACGCCGTTACCAGACAGCGTCTT
GTCTAGGAACTTGGGTGGAGAATCGTCGTCTTCAATCGATCCAGGGTCAGGACTAGCGTC
TATGATGCCTGGTGTTGTGACTCCAGGGATGTTGACACCATCAGGTGACCTTGATTTAAG
AAAGATCGGTCAAGCCAGAAATACGCTTATGACAGTAAAACTCTCACAAGTGTCAGACTC
TGTGACAGGTCAAACGGTAGTTGACCCCAAAGGCTATCTGACGGATTTACAGTCAATGAT
ACCAACTTATGGTGGTGATATTAATGACATCAAGAAAGCTAGACTGTTATTGAAATCTGT
ACGTGAGACAAATCCTAATCATCCACCCGCTTGGATTGCGAGTGCTCGACTAGAGGAAGT
AACAGGTAAAGTACAGACAGCACGTAATCTCATAATGAAGGGATGTGAAGTCAATCCGAG
CAGTGAAGAGCTATGGCTAGAGGCAGCTCGCTTGCAACCAATAGACACGGCTCGTGCGGT
CATAGCTCACGCTGCGAGGAACCTGCCTCACAGTGTCAGGATTTGGGTCAAAGCGGCTGA
CTTAGAACAAGAGGCAAAGGCGAAACGTCGTGTGTTCCGCAAAGCCTTAGAGCACATTCC
GAATTCGGTGCGTCTGTGGAAGGCGGCCGTCGAACTCGAGAATCCGGAAGACGCCCGGAT
CCTGCTGTCTCGCGCCGTGGAGTGCTGTCCCACCAGCGTCGAGCTGTGGCTGGCTCTGGC
GAGACTGGAGAGCTACGAGAACGCAAGGAAGGTGCTGAACAAGGCAAGAGAGAACATCCC
TACAGACCGACAGATCTGGGTCACGGCGGCTAAACTCGAAGAAGCGCACGGCAACACTCA
CATGGTAGAAAAAATTATTGATCGTGCGATAACGTCGCTGAGCGCCAACGGGGTTGAGAT
CAACCGCGAACATTGGTTTAAAGAAGCCATAGAAGCTGAAAAGTCTGGAGCTGTTTCAAC
TTGCCAGGCAATCATTCGTGCGGTCATCGGTCACGGAATTGAACCCGAAGATCAGAAGCA
CACTTGGATGGAAGACGCTGAAGCTTGCGCCACTGAGGGTGCGTTCGAGTGCGCCCGCGC
CGTGTACGGGTACGCGCTGTCCGTGTTCCCGTCCAAGAAGTCCATCTGGCTTCGCGCCGC
CTACCTGGAGAAGCAGCACGGGACTCGCGCCAGCCTCGAGACGCTGCTGCAGCGGGCCGT
CGCGCACTGCCCCAAGTCGGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTCGC
AGGCGACGTACCGGCGGCTCGGGGTATCCTGTCGCTGGCCTTCCAGGCCAATCCCAACTC
TGAAGAGATCTGGTTGGCCGCCGTCAAACTGGAGAGCGAGAACAAAGAGTACGACAGAGC
GAGACGGCTGCTGGCTAAAGCTAGGGCTTCAGCTCCCACACCGAGAGTGATGATCAAATC
AGCGAAACTAGAATGGGCATTGAACAATCTGGACGTAGCCATAAAGTTACTGGACGAAGC
GATCAAAGTGTTCGGGGACTACGCAAAGCTTCACATGATGAAGGGACAGATTGAGGAACA
AATGGCCAAGGACGAAGACGCTCACAACACATATAGTCAAGGGTTGAAAAAATGTCCAAC
GAGCGTCCCCATGTGGATCTTGCTGTCGAGACTGGAAGAAAAACTGAAACACGTGACCAA
AGCGAGGTCCGTGCTGGAGAAAGCCAGGCTCCGGAATCCTAAAAATGCCGAACTGTGGTT
AGAAAGTGTGCGATTGGAAAGACGAAACGGAAGCCCGGAAATAGCTAATGCCGTTATGGC
GAAAGCTCTTCAAGAGTGCCCATCTGCCGGTCGACTGTGGGCGGATGCTATCTTCATGGA
ATCGAGACCGCAGAGGAAGACTAAAAGTGTTGATGCGTTGAAGAAATGCGAACACGACGC
CCACGTGCTGCTGGCTGTCTCACAGTTGTTCTGGACGGAGAGGAAACTAAACAAATGCAG
GGAATGGTTCAATAGGACGGTAAAAATCGATCCCGACTTGGGGGACGCTTGGGCGTATTT
CTATAAATTCGAGTTACTTCACGGCAACGAACAGCAACAGGAGGACGTGAAGTCGCGTTG
TCGGGCCGCCGAGCCGCACCACGGCGAGTACTGGTGCAAGGTTTCTAAGGACATCGTTAA
CTGGTGTTTCAGCACCGATCAGATACTGCTTCTCGTCGCTAAAAACCTGCCAGTTCCTTC
TTAAAGACTTTAAATCCTTAAATACGTTTAGTTTTATGTATGTTAGCATGTAACGGAATC
TTTGAACTTACTGGTGGTAGGACCTCTTG
(2489 bp)

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