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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29820_g1_i3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:10.64 TPM:8.16
ORF EntryO_BomoASG17355_3prime_partial:A_BomoASG_c29820_g1_i3
Sequence
(Nucleotide)
GGTAACTCTCTGGGCTGCGGACGTTCACGAAAATTTTCCGAACATGGCACGAAGCAGCAG
GCAGCCACTTTGGTTCTTTCGTCATCGTGTGCTGATTACTACTGAAATTTAATTTATAAA
TTGCTGAGTGGGGTGATAATAATTATGTTGTTTTTATCAAAGTGAACAATAAAATTGGTG
ATGTTGGGCTTAGGTTTATTATCATTTCGTCAGAAAACTACCAAAGAACACAAGTTCGTC
GTAGAAAATCATAAAAAATCGAGAAAGCTTCAAACGTGTTTGAAGCTTTCGTTTTTGCAT
TAATGGAACTATGAACCTGGACTCTTTAACGTTGAGCTTATCGCATATACATTATCTCGT
CGTAAATTTAAACAAGAAAAATTTCAAGCAGACGAGTCAAGAATTGAATCAGATTGTCAG
TGTCTATGGCTTGGAAGCAGAGAATCAAGTTTTAAGATGTCTTCTCACTGAAGCGGCAAG
GATAGCTTGGGACGGAGACCGTACAACTTCTGCAGCTACTAATAGCATCCACGCCTCCCT
TCTTGGACAACAGTTGGCAGGCTTGCTCAATCATCCAGCTAAATCAACAGTTGTTTGCCG
GGCTGTTGATCATCCAACACGCTCTGTAACAAAGCTATTAAAGCCTACAAATGCACTATT
GAATCGACTATCTAGACTGTTGAAGTTAACTACAGCAGAGGATGTTGCCTTTTCATTGGC
TCTGAGAAGGTATTCAACAAAGAGTGAGATAGTTGCAGTTGCAAAGCAGCACTTGAAGAA
AAGATTCTTGGATTTAATACAGTGCTATCTCGACGCAGAACGGGGACATCAGGCGGAGCG
TGCAGGACTTCAGGAATGCAGCCCTGAAGTGTTGCAGTCACTCCTCACGAGTCTCGCGCT
CGACAATATCAAATTAGCGGCAGTTACGAAGGATTTGTTTTTGAAGAGACTGAGATCAGA
CTTCCCTCGTGAAGTAGTCCCGATAGTACTCGCACCGTTGATTTATCCGGACGACACTCA
GACACCTCTCGAGGAAATGACTTCAGCCGATGATATGGCTGCTGCCATGATGGAGAATTC
CCTGCCAGATATTATCCGAGATATGGGCCATGCTTTTACAACTTCAGTTGAGGATTGCAA
GAACAATATGATAAACTTTGGTGCGAGAGAACCAACCGCAATAGACGTGGCTAGAATCAT
AGCTGTGATGGTTCGCTATCACAGTAACCAACAAGACGGTCCGCAAATACAGACACCAGG
CAACTTTTGGATGAGTCATGAAGCTAAAAAAGAACCAGCTGCACATCCACACAGTGAATG
GAATGCTGAAGTATTTGTTCAGACATTAAAAGAATTAGCATCTAATCTGAACTGGAAGGA
AGTGATACTACAGCTGGATCACCCAGAATTCTTTGTACCAGACCGAACAGGACTATCCCT
ACTATTCACCATACTGAGACTTGGTCTACAGAGCGCCGGCTATCCGGCCAATATATTCCC
CGTTGAGTATTTATGCCGACGGTGGACGAATTTGGAAGGACAGATGAGTTTGATCAGCCA
CATTCTCAAACATTCTGACGTATTCTGTTTTGCCGATCATCCTTTTCATCCAGTATCAAT
AGACATTTTGAAATCTCCTCCTGAGACCGACAACAAAGAAGTGGGCACTTGGCGTTGCCT
CTACTTAGTGGAGTTACTGCTGTATGCTGCAGAGCGTGGTTATTACATGCAAGTCCATGA
ACTCTTTAAAATGCCACTTCAACATTGTCCCGATATTTTGCTCTTAGTTTTACTGCAAAT
CAGTCCACCGATTACTGTCTTTAGGCAAGAGTTATTGACGACACTGATTCCAATATTTCT
AGGTAATCATCCAAATTCAGGCATAATTCTCCACCACGCCTGGCATACACAGAACCCTAA
CATAAAACCTATCATCATGCACTCAATGGCAGATTGGTACATACGCGGTGAGAGTGACCA
ATCCAAATTATCTAGAATTTTGGACGTCGCACAGGATTTAAAGGCGCTGTCGCTCTTATT
GAATGTACAATCGTTCCCGTTTGTTATTGATTTGGCTTGTTTGGCGTCTAGGAGGGAGTA
TCTCAAATTAGATAAATGGTTGACCGACAAAATCAGAGATCACGGTGAGACGTTTGTGTC
GGCTATGGTGAAATTTTTACAAAGGCGATGTCCACAGGTGCTCGGCAAGGCACCCGAAGA
ACAATTGCCTAAGGCTGCGCAGCTGCCACCCGAAACGATTACAACAATGTTGGCTTGCTT
ACAACTATGCATTCCAAATGTTTCTCAAGAATTACAGGAGGCTATTTACAACGTAATAGG
AAGCTGTCAGACGTTAATACTCAGCAAAACACGACAAAACATTGCGGGAATAGCAAGACC
TCATACAAGGGTCATGGAAACTCAATTCAATCCAGCTGGCCTAGGAGGGCAATTGTTTAC
ACCCCACGTTGACGCTATCGGTAATTTGGCACCGGGCATGGCAAATATGACTTTAGGTGC
CCCCGCGAATACTGCATTTGCTATGCCCGGTACACTCGGACCACTCGTAACCACTCCGGG
CTCTCCTGTTAGGCTACTTGGAGGCGGACCTAACAGTCCGTTTGCCATGATGCCGTTACC
GCCCAACGCAAACCTCGGAGCGCTCGCGAGAATGGCTCCCGCTCCCGCGATTGATAAACC
TCGTCTGCAGGATCCCATTCCCTTCCCGGAAGTGATGCACACCGTTGCTAAGGAAATCGA
GGACGAAGCAAACAGTTACTTCCAAAGGATATACAATCATCCTCCACATCCGACTTTATC
AATAGACGAAGTACTAGATATGCTCAAAAAATTTCAGGATTCCCCTAACAAGAGGGAACG
GGAAGTATTCTCATGCATGTTGCGTAATCTTTTTGAAGAGTATAAGTTTTTCCCCCAATA
CCCCGACAAAGAGTTACAAATTACTGCTCAACTGTTTGGCGGTATCATCGAAAGAGGATT
AGTCCCAAGCTACGTGTCTTTAGGGTTAGCGTTGCGTTTCGTTCTTGATGCTTTACGAAA
GGCCGAGGGATCGAAAATGTATTATTTCGGAATTGCGGCTTTAGATCGTTTTAAATCTCG
TCTTAAAGATTATCACAAATATTGTGAGCACGTTCGCGCTATTCCGCATTTTAGTGAATT
CCCTCCCCATTTGATCGAATATGTCGAATATGGCTTACAAAGCCAAGAACCTCCCAATAA
ACCCCAGGGGCCGGTACTTCCTGCTACGTTGGCTGCTATTCTTAATCAGAGTGCCGTTGT
AACTGTCTCGGCGCCTTATAGGCCAGTAGTTTGTGCTCCTCCATCTATTTCGGTGATGTC
GAAAATGGCCGCGTGCCCTGCTGGAAGCATGGGTAGTAGGCCATCTATCGCGAACGCTAC
AAATATCGACACTCTTTTGACTGCTACTGACAGGGAAGAAAAAATTAATGCCCCACCAGA
ACCCATACAAGATAAAA
(3497 bp)

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