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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29686_g1_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_regulator_of_nonsense_transcripts_2_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:15.40 TPM:11.81
ORF EntryO_BomoASG17020_complete:A_BomoASG_c29686_g1_i1
Sequence
(Nucleotide)
TTATGACACCTTACCCAAATGTTTGTAAATTTTTAAATGAATTAAATGTGATTTGCTGAG
TTAATAAATGCAAAAGAAAGTTGCTCACACCATATAGTGGTGTCCATTGGCTTCAAATAA
TACCTATCTAAAAGATAAAATGACTGCCACCAACAACGATGAGGCAAACGAAACACCTAT
TGAAGAACCGCTTAAAGATTTAGAAGAAAATGAGAAAGCGGCTCTCGAAGAGTATACAGC
TAACTTGGAAGCCAGATTGAAACAAAAATATGAAATACGTAATCAAAATTTGAATTGCTC
TCGACCACCAGAAAATTATTTTTCCAAGCTAGATTCAGGTTTGAAAAAGAATACCACATT
TGTAAAAAAACTAAAATCATTTAGTGCTTCTCAGCTGGATGTACTTTTGAAAGATTTTGC
AACATTAAATCTTACAAAATATATATCAGAAGTGGCTGCTGCAATAGCAGAAGCAAAATT
GAAAATGTCTGATATTCCTGCTGCTATAACTCTATGTTCAGTTCTTCATCGTACTTACGC
TGATTTTTCATCTAACTTTTTTGAAAACTGGCAAAAGATTTTAACATTCAAAGCGACTGA
TAAAATAACAAATTCATCAAAACTGCGGGTGGATATAAGATTTTATGCAGAATTAGTGGC
TGTCGGTATTTTTATGAATAAAACTGGATTGCCTTTGCTGGGTAATGTATTAACTGTTCT
AATAAACATGGACAAAGAAGAGCATAACAATATACCAATTTTGTTATCATTTTGCAAACA
CTGTGGTGATGATTATGCTGGACTTATGCCTAGAAAAATACGAGAAGCTTCTGAGAAACA
TAATATTCCTGTTCCTCGAAATACATTTTTACCGGCAGAGAAACAAACAGCAGTTAGAAC
TCTCTTGAAAGATTACTTTCTTTCACTAACCAAACATCTGCTGGCGGAAAGAGCTCAACT
TCAAGCTCTGCATGCAGCAAATCAGAGGACTCTGCACACCAGAGGAGAACTCTCACAAGA
AAGAAAAGAACAATTAGAACAACATCAAACAACTTATGACAAGCTACTAGTAAATGCACA
AAATTTTGCTGAAGTTCTTGGAGAAGATTTGGGTGAAGCTGGTGAACCTCCCACTTTGTC
CCTGACTGTTATAGAGACTCAAGGAAGTGTAACCATTGGTGGCAATGAAGACATCACTAT
GCAAGCCGGTACTGATCCTTGGCAGGACGAAGATTCTAGAACATTCTATACATGCTTGCC
TGACTTAAAAGTTTTTATGCCTAACTATCAAATGAAAGAGACTGTGAAAAGCAAAACTGA
AACGGTAACAGAAGAAATGTTAGATGAAGATTTGAAGGAGGATGAATTAAGTGACAATGA
GGACCCATCTGTAGTTCAAGAAGTAGAAACTGAAGAAATACAACCACCAAATGTTTCCAA
TAAACATGGATTAGATACATTTTTGAATGAACTTCCCAACTGTATCAACCGAGAACTCAT
AGATAATGCAGCAGTTGATTTTATCCTGAATCTCAATACAAAGAATAATCGGAAGAAACT
TTCAAGAGTTCTCTTCAGTGTTGCCAGAACAAGGCTAGATCTGTTGCCATTTTACTCAAG
ATTTGCTGCGATTTTATATCCAGTACTGCCAGAAGTATGTGTTGACCTGTGTCAAATGTT
AAAACAAGACTTTAAGTATCATGTCAGGAAAAAGGATCAAATAAATATTGAATCGAAGAT
AAAAGTGGTGCGATTCATTGGGGAACTGGTTAAGTTTAATTTGTATTCGAAAATGGAGGC
GCTGTACTGTTTGAAAGTGTTGCTGCATGATTTTAAGCATCACCATATTGAGATGGCTTG
CAATCTGCTTGAAACGTGTGGTAGATATTTATACTGTAATCCAGATACACACCAAAGGAC
TATGATATATTTACAGCAAATGATGCGAAAAAAAACTGTTTCAGCTCTAGATTCGCGATA
TGTAACACAGATAGAAAACGCATTCTATTACGTTTGCCCTCCCGAAACTCCTGTTCAGCC
TAAAGAAGAAGAGCCACCACTTCATCAATTTATCAGAAAAATACTTCATGAAGACTTGCA
GAAAAGTAATGAGGAAAAAATTCTTAGACTAATGCGAAAACTGAATTGGGATGACCCAGA
GGTATCCGCCATTGCCATACAACATCTCGCAGGAGGTTGGAGGGTAAGAGCAAGTGCCAG
AAGGGCTCTGGCCAGACTGACAGCTGAACTGGCAATCTGGCAAGAAGTAGTAGCTCCAGC
AGTCGTTGACACAATATTAGAAGAAATAAGGGTAACAATGGAAGACCCACATCCAAGATA
TAATCAAAGAAGGATAGCTACTGTTCGGTATCTCGGAGAACTCTATAATTATAAATTATT
AGATTCTCGAGATGTTTTCACTGTTTTATATTCATTTATAACATTTGGTGTCACCAATGA
TCACAGCAGTGTATCTGTATTGGACCCATCTGATAATGTTTTTAGAATAAGACTAGTCTG
CGCTCTGCTTGAGACTTGTGGTGCATACTTCAACAGTGGTTCGAGCAAAAAAAGATTAGA
CTATTTTTTGACCTTCTTCCAAAATTACTATTGGTTCAAGTTCTCTGATCCGATATGGAC
AAAAGACTATCAATTCCCTATTTACGTTAAATATATTTATCAAGAATGCCTGACGACTTT
ACGCCCTAAGTTGACTTTGTTTACGAGCTGGCAACAGTGTAAGGATGCAATAGATGAACT
ACGACAGACTTTATATCCGGAGCTAGGAGAGGAAGAGTACGATAATGAGGATCAAGGTGA
TGATAGTGTGAACGACGGCTTAGACACAATCATGGAAACGGATGATGAAACGGACAATCC
GCAATTGCCTGATGAAAGCTCTGATGAAGAACCGATTACCGAAAATAATGTTAATGACGA
AAACGAAATGCAAGATGAAATGGCAATTGAGCCACGAAGACCTGCTACTAAACATGTAGA
AGACGTTGAGTTCGAATCGGCATTCGAGAAAATGGTAACAGAAAATATTGCAGAAAGACA
ACGGGAGAATAGACCGCAACAACGCGACATTGCTGTCCCGATGACCTGCAGACAGACTAC
GAAGAAGACGTATGAACAGCTCTTGCAAGGAAAAGAGGGCGTGGAATTCGTTCTTATGGT
TCGTAAAGGAACGAAACCACAATATAAATCGTTCAGTGCTCCACCGGAATTGGCCAGCAA
TCTACAACAACAAGCTTTAGCTGATAAACAAGAAATGGAACGAGTTAAACGACTTACTCT
AAATATATCGGAAAGACAAGAAGAAGAAGAATATAGCGCAGAGAGCGGTGGTGGATCGGG
AGGTATCGGTAATCCTAACAGAGGTCAGCATGTTCGTCAGAAATACCAACATCCCAAAGG
GGCACCGGACGCCGATCTCATATTCGGTCCTAAGAAATTTAAATAAATAAAAAACTAATG
TATGTAATGTATTGTAATAATATATGTAATAAAAAAAAAA
(3520 bp)

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