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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29668_g1_i3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN3_isoform_X8_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004672 F protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0031251 C PAN complex
GO:0044822 F RNA binding
Transcript
Level		FPKM:4.29 TPM:3.29
ORF EntryO_BomoASG16976_complete:A_BomoASG_c29668_g1_i3
Sequence
(Nucleotide)
CTGTTTCACTGTAGTGTACGTACACTGGTACACACTACCTTCACCGACGTATTAGGACTC
ATCTCTTACCTGTTCCTGTTTAATGTCTCTATTGTCTTCGTGTCCCCGTCTCTGAGAGTC
CGTGAATTTTGTATTAAAATTGCTGCCCCAGTGTTTTGTGTGAATGAATCAATAAAGATT
GCCTTTAAGCCCCGTCTTTTGAGACAATGAAATACGTAGTTTTTAGATTTTTGAGGGTTT
GATTTCTATCACGTATTTAATATAGTATTCTAGCTTTCCAAATATGTCTGGTTGAAATTG
AACCCTTAATAACGACATGTTGGGGTACTCTCATTGTCATGAATAACTGTGAATCGAAAA
GAATCATAAATTAAGCAGACTGCACAGACGCACTGCAGTTTTGAAATTATGGATCCATCA
ATATTTCTACCATACGCACCGCCTAACGGGCTTCCACAAGAATCGAAGCTAGTTACATAC
ATGAGTCGCTCAACTTCGACGCCCACACGCTCTCTTAACCATGCTATAGGGAAGCTCACT
TTGGATTCCTCACCACCAGGTGTTAAGAAGGTATTGGTGAGCGAATTTATTCCGATGAAC
TACTATGTTCCGCCACCGAATATGCTTCCCCCAGAATCACCTGAGGGTCCACCACCACCT
CCTATACCAATGGCGAATGCTTCAACTGTCCATCAGGAGAACGTGGGAGGAACTACCTAT
TTCTACTCGACCAATTCAGACAGCCTCAATACCACTAGCGGTCTTAATTCATCGGCTTCC
ATGGGTCCGTCTGAGCCATGTCTAAACGCAGTAGGGCCGCCGATGGTGTCTCCGTATGCT
TCGCAGATGTACGCTGGGGCCTTACCGCAGCCAGGGCCGTCCACCAACAAACAAGGTCTA
GCGGCGACTTTTTACAATCCCGAAACAATACGGTCTGAGATCTACGACAGGAATGATGAT
GTTTATTTGCAGCCTGATCTCAATCAGTTTCCAGATATACCGGACAGCGTGGACATGTAC
GCCGAGCTGGTACCCCTGGAGGGTGCCGTGACGCATTCGATGTCGACATCGTACCGCGCT
ACTAACCGTCAGAACGGTGATTATGTGGCTCTAAGGAGGCTCCATTCTTACACGTCGCCG
GCCTCCAAGCGTCTTGAAATGTGGAAGCAGATCGACCACCCGAACATTGTGCGTCTGGAA
GAATATTTCAGCACCAAGGCTTTTAACGATATATCACTGGTCCTGGTGTACCAGTATCAT
CCAGCCGCTGTGACTCTGATGAACAAGTATTTGTCCGGAAACGGAAACAACTCCGCCGAG
GGTGGAGCTGCTTATCATGATCCGTTCTCTTCGGACCCGGATGCACCGCGTCCGTATACC
CATCAGAAAAATGCCATGCTCCGTGCGGTCGCATGCGGTGCTTTGCTTCCGGAAGCTGTG
TTGTGGAGTCTGCTCGTGCAACTGACGGCCGGCTTGCGCGCCATACATACAGCCGGACTC
GCCTGCAGGAGCCTGGAGCCGACCAAGGTGATCATGAACGGATGTCGAGTCCGAATTGCA
TGGTGCGGTGCTGCTGATGCTCTACACAGCAACACCAATGATGTAGTACAGGCTCAGCAA
GACGATCTGACCGCTTTGGGCCGGCTGGCACTGGCTCTAGCCTGTCGCACCATACATTGC
GACAACCTCGCAGCGTCCATGGAACTCGTCGCTAGGACCTACTCTGCGGATCTGAAGAAC
CTAATTCTGTATCTGCTGTCATCCTCGCCTGCGCGTCGTTCCGTTATCGACCTTATGCCT
ATGATCGGAGCTAGGTTCTATACTCAGGTGGAGGCACTGGAGAGACGCGCTGATGCGTTT
GAAGATCAGCTGTCCCAGGAGATAGATAACGGTCGTCTCCTCCGCATATTAATCAAGCTT
GGCATTGTCAACGAGCGTCCAGAATTGAATCTGGATCCTGCTTGGTCGGAGACCGGAGAT
CGCTACATGCTGAAGCTGTTCCGTGATTATCTGTTCCATTCAGTGACGACTGACGGCCGT
CCTTGGCTGGACCAAGCGCACCTAACGCACTGCCTGAACCAGCTCGACGGAGGAACTGCT
GCGAAGGTGGAGCTGATGTCTCGCGACGAGCAAAGCGTCCTGGTCGTGTCCTACGCTGAG
CTGAAGCACTGCCTCGACCAAGCCTTCGAGGAGGTGATGCAAGCCTCCGAGCCCGATTCC
TAGCTAGCACTGAACGCTGGGCCTATGTCTGTGCCCGAGCCAGAGCCCGAGCCGGAATAC
GGCTCCGGCTACACCAATAGCATACCCATCAGGCACGGCGACGACCTGGGCTACGTGACC
AACGCGTACGGCTTCAGCTTTAGTTTCGGTTATATCAACGGGTTCAGCAGGGAGAACAAC
GTTCCAATAAACAATCAGTTTAATGAGCGCGACAACAACGGCGACGGCGGTAATGGCGAC
AACGGCGAATACTTCTTTGGCGGCCCAGGTAATGGCAACCGCTGCAGTTGCGGCCACGAT
TACGAATACATGGAGTAGTTCGCTAAAAAAACGTGACATTCTCGACTATATGTATTCATT
CATATCCGTATATATATAATAATCAATTCAATGTTTGTTAGTCAGGTTGATGTATTACCA
CGTATTCGTATTCGGATTGTGTACCAGTAAATGTGCTGCGAGCACTGTTTACGTACTTAG
GAAACATCGTCCCGATCAGGACTTGTACTTACGGACATTTGATTCTATGTTTGTCCAAGA
TAAGATTGAATTGGATTGCATCGTACTGGGCTATGTCCCTGTACGGGGTTCATTAGGAAC
CTTTTTCTCGAACAGAGGTTTTTTTTAAATCTTATAATAATAAACATATATTAATCACAC
TGAAGATTTCAGATAGTTATTATAAACAAGTTTAATCATTATATACTCCCTTTTGTGTGA
ACGCATTTTTATTCGTAGTATTTTTGTAGTAGTACACATGTATGTTCTACACGTAATATA
CAGGATGTAATAGGACTTCCGGTGTCAATACACTACACCACATCTCGTTATTCGAAAACA
GAATTAGGAATATAACCCGAAGGTTATATAGATTCAGTATTTCGTGATCCCGCAATGAAT
GCGTACAAAATTCGGGGTCAACAACCGCACCCAGTATGCAACAAGCGATGGAACCTCGTC
CAAGTCTCTTTCGCGGCGTCAGCCAATCACTTATTGTGTTATGTACGATCAGCAGTAGAA
TTGCATGGGATAAATAATTTATTATATATTATATAAAGATGATTTTATATAAATAATATA
TTAAATATAAAGACAATTATTGTCTTTAATTTCGAGATCTTGTTCTATTACATCCTGCAT
ATCATAACAGCGATGCGTCGGAGTTAAATAATTAATCATGTAGATTTAAGTCATTGTCGA
GAATGATCACGTAAGCCGTTTTATTACATTTCATTAGTATTTATATAATAATAAACGTAG
TGTTTATATGTAATAGTAATGGTGGAATTATGATTCTGAGGTGTATTGGTCCGGTGTTCG
ATCGTTGCCTGCAACATTTTTTTTTTAATATGAACGCCTAACCTATCTACGTAAATGAAC
GGTAGATTCAAATTAATTAACATCAATAAAACAGATGTAATGGCTTAATTATGAATAAAA
CATACCGTTTCTTTTTCTTCTATTGTGGGTATGTAACGACAACTCGGATTGTTAAACGAT
CTCATTTTCAAAGCGAACCTATGAGGGGACCGCGTCAATCGCGCCGCTCTATTTAGTGTT
TTTTTTTTCCAAGATAACTTAGCAATTAAACCATTTCGTATAATAATCATAATCTATAGT
ATTTCCGGAGCGCCTAATGGCTGCACGCTAAGATTTAGCCGCCCGAACAAACATTCCAAG
CTATCAATGTGTAACGATCAAATGTTTTGTGGATTATTGGTATGATGACGGCGCCGTCCA
TCGATGAGCGTTTCGCGACTAACGACGGTAGTGTCGACCAAAACGATCATTTTGGAGCAC
GAACACGTTTATTTTGGATTACATCGACTGTCGTGTATTGTGCGAATTTGTGTTTTTTTT
TTTTGTCCGAAAAGCGCAAACGCTCATTTTGTACTTTGGTCACGTAGATCTGAATTTGTA
TTGGGCCTTTTATGTGTACTTACAAGTCAGCTGCAAGACCCAAAACAGCAGGCATGTGAC
CGTCGACAACGGTTGTGTTTTTTAATTAAATTTTTTTTTTTCTATTTTTCATATCCATTT
TTTTTTCTTATAATTTTATTGTGAAGTTAACGAACCACCAAATTAATAGGAAACGTATTA
CAATTGATTATGTATCGGCTGTTTCTACTTAAGAGTAGTATTATAGAAGCCTATTGGCTG
CTGGAGTGGCAGG
(4393 bp)

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