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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29668_g1_i2
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN3_isoform_X7_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004672 F protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0031251 C PAN complex
GO:0044822 F RNA binding
Transcript
Level		FPKM:13.31 TPM:10.21
ORF EntryO_BomoASG16973_complete:A_BomoASG_c29668_g1_i2
Sequence
(Nucleotide)
CTGTTTCACTGTAGTGTACGTACACTGGTACACACTACCTTCACCGACGTATTAGGACTC
ATCTCTTACCTGTTCCTGTTTAATGTCTCTATTGTCTTCGTGTCCCCGTCTCTGAGAGTC
CGTGAATTTTGTATTAAAATTGCTGCCCCAGTGTTTTGTGTGAATGAATCAATAAAGATT
GCCTTTAAGCCCCGTCTTTTGAGACAATGAAATACGTAGTTTTTAGATTTTTGAGGGTTT
GATTTCTATCACGTATTTAATATAGTATTCTAGCTTTCCAAATATGTCTGGTTGAAATTG
AACCCTTAATAACGACATGTTGGGGTACTCTCATTGTCATGAATAACTGTGAATCGAAAA
GAATCATAAATTAAGCAGACTGCACAGACGCACTGCAGTTTTGAAATTATGGATCCATCA
ATATTTCTACCATACGCACCGCCTAACGGGCTTCCACAAGAATCGAAGCTAGTTACATAC
ATGAGTCGCTCAACTTCGACGCCCACACGCTCTCTTAACCATGCTATAGGGAAGCTCACT
TTGGATTCCTCACCACCAGGTGTTAAGAAGGTATTGGTGAGCGAATTTATTCCGATGAAC
TACTATGTTCCGCCACCGAATATGCTTCCCCCAGAATCACCTGAGGGTCCACCACCACCT
CCTATACCAATGGCGAATGCTTCAACTGTCCATCAGGAGAACGTGGGAGGAACTACCTAT
TTCTACTCGACCAATTCAGACAGCCTCAATACCACTAGCGGTCTTAATTCATCGGCTTCC
ATGGATTTCCACCAACCAGGTCCGTCTGAGCCATGTCTAAACGCAGTAGGGCCGCCGATG
GTGTCTCCGTATGCTTCGCAGATGTACGCTGGGGCCTTACCGCAGCCAGGGCCGTCCACC
AACAAACAAGGTCTAGCGGCGACTTTTTACAATCCCGAAACAATACGGTCTGAGATCTAC
GACAGGAATGATGATGTTTATTTGCAGCCTGATCTCAATCAGTTTCCAGATATACCGGAC
AGCGTGGACATGTACGCCGAGCTGGTACCCCTGGAGGGTGCCGTGACGCATTCGATGTCG
ACATCGTACCGCGCTACTAACCGTCAGAACGGTGATTATGTGGCTCTAAGGAGGCTCCAT
TCTTACACGTCGCCGGCCTCCAAGCGTCTTGAAATGTGGAAGCAGATCGACCACCCGAAC
ATTGTGCGTCTGGAAGAATATTTCAGCACCAAGGCTTTTAACGATATATCACTGGTCCTG
GTGTACCAGTATCATCCAGCCGCTGTGACTCTGATGAACAAGTATTTGTCCGGAAACGGA
AACAACTCCGCCGAGGGTGGAGCTGCTTATCATGATCCGTTCTCTTCGGACCCGGATGCA
CCGCGTCCGTATACCCATCAGAAAAATGCCATGCTCCGTGCGGTCGCATGCGGTGCTTTG
CTTCCGGAAGCTGTGTTGTGGAGTCTGCTCGTGCAACTGACGGCCGGCTTGCGCGCCATA
CATACAGCCGGACTCGCCTGCAGGAGCCTGGAGCCGACCAAGGTGATCATGAACGGATGT
CGAGTCCGAATTGCATGGTGCGGTGCTGCTGATGCTCTACACAGCAACACCAATGATGTA
GTACAGGCTCAGCAAGACGATCTGACCGCTTTGGGCCGGCTGGCACTGGCTCTAGCCTGT
CGCACCATACATTGCGACAACCTCGCAGCGTCCATGGAACTCGTCGCTAGGACCTACTCT
GCGGATCTGAAGAACCTAATTCTGTATCTGCTGTCATCCTCGCCTGCGCGTCGTTCCGTT
ATCGACCTTATGCCTATGATCGGAGCTAGGTTCTATACTCAGGTGGAGGCACTGGAGAGA
CGCGCTGATGCGTTTGAAGATCAGCTGTCCCAGGAGATAGATAACGGTCGTCTCCTCCGC
ATATTAATCAAGCTTGGCATTGTCAACGAGCGTCCAGAATTGAATCTGGATCCTGCTTGG
TCGGAGACCGGAGATCGCTACATGCTGAAGCTGTTCCGTGATTATCTGTTCCATTCAGTG
ACGACTGACGGCCGTCCTTGGCTGGACCAAGCGCACCTAACGCACTGCCTGAACCAGCTC
GACGGAGGAACTGCTGCGAAGGTGGAGCTGATGTCTCGCGACGAGCAAAGCGTCCTGGTC
GTGTCCTACGCTGAGCTGAAGCACTGCCTCGACCAAGCCTTCGAGGAGGTGATGCAAGCC
TCCGAGCCCGATTCCTAGCTAGCACTGAACGCTGGGCCTATGTCTGTGCCCGAGCCAGAG
CCCGAGCCGGAATACGGCTCCGGCTACACCAATAGCATACCCATCAGGCACGGCGACGAC
CTGGGCTACGTGACCAACGCGTACGGCTTCAGCTTTAGTTTCGGTTATATCAACGGGTTC
AGCAGGGAGAACAACGTTCCAATAAACAATCAGTTTAATGAGCGCGACAACAACGGCGAC
GGCGGTAATGGCGACAACGGCGAATACTTCTTTGGCGGCCCAGGTAATGGCAACCGCTGC
AGTTGCGGCCACGATTACGAATACATGGAGTAGTTCGCTAAAAAAACGTGACATTCTCGA
CTATATGTATTCATTCATATCCGTATATATATAATAATCAATTCAATGTTTGTTAGTCAG
GTTGATGTATTACCACGTATTCGTATTCGGATTGTGTACCAGTAAATGTGCTGCGAGCAC
TGTTTACGTACTTAGGAAACATCGTCCCGATCAGGACTTGTACTTACGGACATTTGATTC
TATGTTTGTCCAAGATAAGATTGAATTGGATTGCATCGTACTGGGCTATGTCCCTGTACG
GGGTTCATTAGGAACCTTTTTCTCGAACAGAGGTTTTTTTTAAATCTTATAATAATAAAC
ATATATTAATCACACTGAAGATTTCAGATAGTTATTATAAACAAGTTTAATCATTATATA
CTCCCTTTTGTGTGAACGCATTTTTATTCGTAGTATTTTTGTAGTAGTACACATGTATGT
TCTACACGTAATATACAGGATGTAATAGGACTTCCGGTGTCAATACACTACACCACATCT
CGTTATTCGAAAACAGAATTAGGAATATAACCCGAAGGTTATATAGATTCAGTATTTCGT
GATCCCGCAATGAATGCGTACAAAATTCGGGGTCAACAACCGCACCCAGTATGCAACAAG
CGATGGAACCTCGTCCAAGTCTCTTTCGCGGCGTCAGCCAATCACTTATTGTGTTATGTA
CGATCAGCAGTAGAATTGCATGGGATAAATAATTTATTATATATTATATAAAGATGATTT
TATATAAATAATATATTAAATATAAAGACAATTATTGTCTTTAATTTCGAGATCTTGTTC
TATTACATCCTGCATATCATAACAGCGATGCGTCGGAGTTAAATAATTAATCATGTAGAT
TTAAGTCATTGTCGAGAATGATCACGTAAGCCGTTTTATTACATTTCATTAGTATTTATA
TAATAATAAACGTAGTGTTTATATGTAATAGTAATGGTGGAATTATGATTCTGAGGTGTA
TTGGTCCGGTGTTCGATCGTTGCCTGCAACATTTTTTTTTTAATATGAACGCCTAACCTA
TCTACGTAAATGAACGGTAGATTCAAATTAATTAACATCAATAAAACAGATGTAATGGCT
TAATTATGAATAAAACATACCGTTTCTTTTTCTTCTATTGTGGGTATGTAACGACAACTC
GGATTGTTAAACGATCTCATTTTCAAAGCGAACCTATGAGGGGACCGCGTCAATCGCGCC
GCTCTATTTAGTGTTTTTTTTTTCCAAGATAACTTAGCAATTAAACCATTTCGTATAATA
ATCATAATCTATAGTATTTCCGGAGCGCCTAATGGCTGCACGCTAAGATTTAGCCGCCCG
AACAAACATTCCAAGCTATCAATGTGTAACGATCAAATGTTTTGTGGATTATTGGTATGA
TGACGGCGCCGTCCATCGATGAGCGTTTCGCGACTAACGACGGTAGTGTCGACCAAAACG
ATCATTTTGGAGCACGAACACGTTTATTTTGGATTACATCGACTGTCGTGTATTGTGCGA
ATTTGTGTTTTTTTTTTTTGTCCGAAAAGCGCAAACGCTCATTTTGTACTTTGGTCACGT
AGATCTGAATTTGTATTGGGCCTTTTATGTGTACTTACAAGTCAGCTGCAAGACCCAAAA
CAGCAGGCATGTGACCGTCGACAACGGTTGTGTTTTTTAATTAAATTTTTTTTTTTCTAT
TTTTCATATCCATTTTTTTTTCTTATAATTTTATTGTGAAGTTAACGAACCACCAAATTA
ATAGGAAACGTATTACAATTGATTATGTATCGGCTGTTTCTACTTAAGAGTAGTATTATA
GAAGCCTATTGGCTGCTGGAGTGGCAGG
(4408 bp)

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