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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29549_g1_i2
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		jmjC_domain-containing_histone_demethylation_protein_1_isoform_X4_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
Transcript
Level		FPKM:5.18 TPM:3.97
ORF EntryO_BomoASG16665_complete:A_BomoASG_c29549_g1_i2
Sequence
(Nucleotide)
ATCTCGCGCGGCCACGCCCCGAACACGCCAACTCTGCTCCGCGACGCCGAAGGACTAGGT
GTAAGAAGTGCGAGGCTTGTCAACGTACCGATTGTGGAGAATGCGTCTTTTGTCATGATA
TGGTTAAGTTCGGTGGTCAAGGACGTGCAAAACAAACGTGTATCATGCGACAGTGTCTAC
AGCCGATGTTACCAGTGACGGCTTCCTGTGCGGTGTGTCATTTGGACGGCTGGATGCAAA
CGCCGGTTGCGCCCCAAGCAAAGGGTAACTCCGGTCGTAACGGTCCGTCGTCTCTGCGCG
AGTGCTCGGTGTGCTACAGCATCGTGCATCCGGCCTGCGTGCCCCCCGGCGGACAACTCA
ACGAGGATCTGCCCAACTCCTGGGAGTGTCCCACTTGCACCACCATGGGACTCAACCACG
ATTACAAGCCTCGACACTTTCGAGCTCGGCAAAAGTCATCAGACATACGCCGGATGAGTG
TCAGCTCCGACGCCAGTCAACTCAGTCATCACGGAGTGCAGAACAAGCTGCCACCGCCGC
TAACTCCCGTCACAACGAAGATAGATGGAGGCTCTGATAACGAAGCCAAGAATGACGTCC
CACACATCAAATCGGAAGAGGATATAAAGCGGGAAGAGGAAGAAGAAAATTGCGTGGGCG
GGGAAGAATCCGGTTCATGGGAGCCGCCGGGCAAAAAACGTCGCTCTTCTGATGACGATG
AAGCGCCCAAGAAACAAGCGTTACGGGCTCACCTGGCCTTGCAGCTCACCCATCACACCG
CCAAGTTATTGAAGAAGCCGATGTACCCGGTTCGTCCTGCGCTCGCGGCCGGCACCGCGG
GAGGCTCGGGCTCGCCGTGGTTGGATCGAGAGGCGATGCTCTGTGTCTTCGCGAAGTTGA
CACCGCACGAGCTGGCCACTTGTGCGCTCGTCTGTAAAGCCTGGGCCGAATATTCGATGG
ATCCGTCCTTGTGGCGCAGCATGTCGTTTGTACAAGTGCGCGTCTCGGCGGCGCAGTTGG
CCGGGATCGCTCGTCGACAGCCGCTCTCGCTCGGCCTAGAGTGGTGCCATCTCGCCAGGA
GACAACTGGCTTGGTTGTTAGCCCGGCTGCCTGCACTGCGCTCTCTGTCGCTGGCCGGGT
CCGCAGCTGAGGCCGCGCTCGCACTGCGCTCGGCGAGCTGCCCCCCTCTGCGGGCGCTGG
ACCTCTCGTTTGCTCGCTGCCTCGACGACGCTAAGCTGCGCGGGATACTGGCGCCCCCGG
AGAACTCGCGGCCGGGGGGCGGAGCCCGAGCCGGGGAGCCCAGTCGCCTGGCCGCACTCG
CTGTACTGCGTCTGCCCGGAACTGACATCACAGATGTAGCAATGAGATATGTTGTACAGA
CACTACCCAAACTGGTGGAACTGGATGCGTCGTCGTGCGCCCGACTCACGGACGCAGGTG
CGGCGCAGTTAGCGCATCACTCGCTACAACGACTCTCGCTGGCCGGCTGCCGGCTGCTCA
CGGAGGCTGCTTTAGATCATCTCGCGCGCTGCCCCAATCTTGTTAGATTGGATCTCCGAC
ATGTCCCTCTCGTATCGACACAGGCTGTGATTAAGTTTGCTGCCAAATCCAAACATAACC
TTCACGTTAAGGATGTTAAGCTGGTTGAACTGCGGAAAACCTGATCCGAGGAGGGCGGGG
ACCCGGACCCCTCGCCTGTGCCTGAACCTCAGTCCGAACCCGAGCCCGAGTCTGAGGCTG
CATAAATATTATGTGATAAAAGTGATGTGCTGTGTGTTGCTGTGACGAGTGTAAACCTTG
ATAAGGGTTGATCTACAAAGTTAATCGATTAAAAGTCTGTCTGGCTCAGTGTAAACAAAT
ATTACGAAACAGTTTTTGTCATTTTGTGTGCAATGAGGGCCATAATCTTGGTATCGAATC
CGATAATCTCGTTACTCGCATGCGAGATTGCTCTAATGGGCTCGATTACTGATGTAGTTA
CATTCAGTGTAATTTTCTGTAGTGTGTGTGTGTGCTATTAAGTGTGCTCGAATTTAAAAT
GTGTAACATATCATGCAGTCTGTGGCATCAACACACAGCTGAGGTTATTATATGCAAAGA
CTAAAGTCATACACTGGTACTATTGATGAAGTGATACGATTTCTAATTAGAAAATATGTT
ATTATTAGGTAAATGTTTCAGCTGTATTCATGTTTTCTTTTAAGTTAATTCTCAAAGATA
TAGTGCCAACATTTATAGTTTCTAGCATATTGGATAAAAGCACATTTTCCAATGCACAAT
CGACCATAAAAGTGAATGTTATGTAAAGTTTACACATATATATATATATTTAATTTTATT
GCATACTGTTGCATTGATACTATATTTTATTGGGATTTTGGGCAGATCGGAAGAGCGTCG
(2400 bp)

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