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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29152_g1_i2
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:8.19 TPM:6.28
ORF EntryO_BomoASG15609_complete:A_BomoASG_c29152_g1_i2
Sequence
(Nucleotide)
CGACTACTGCGGGACCACTAGTAAACATTAACGTTTCAGTTCTGAACACAAACTCGAGTT
CCTGATCGGCGATACAGTGCTGCCGTACAACATGACCGTGTACCAGGCGGTGCGACAGTT
CGGGGAACAAACGGACGCCGACACGGACACCGAAACTCCATTGGCGAACGCGGGGATATG
GGTCCAGACACACACGATATATTATCGCGCCGTGGAGCCAAATGAACAACCGCGTTCCGA
AAGCACTCCGTCAAAGAAAGGCAAAGGACAACCCACAAAGATCTCATCCCGACGAAAACC
TGATTTACTCTGGAACGAGGGCGCGGTGCCGGCGCGTGCGTCATCGCTGGTGGTGATGGT
GCGCGCGGCGCTGCTCACGGAGGGCGACGTGCGGGACGCCTCGCTGCCCGCGCTGGGCGT
GCTGCGCGCCCTGCACGCCCTGTCGCGCCACTGGCACGCGCTCTACCGCGCCGCCTGTCT
GCCGGACCACCGCCCTCTCGTGCCGCACGCAGACTTCATCAATGCTAAGCTCGCCGCCAA
AGCCAATAGACAGTTGCAAGATCCATTAGTAATAATGACAGGCAATCTACCGCCGTGGCT
AAAAAAGATCGCCTACGCATGTCCGTTCGTGTTGCCGTTCGAGTGTCGGCACTTGTTATT
CTACGTGGTGTCTTTCGACCGCGACCGCGCCCTGCAGCGGCTGCTGGAGGCGGGCGGGGA
GCGCGGCGGGACGGCGGGCGGCGAGACGGAGCGCGTGGCGCCTCGCCTCGACCGACGCAA
GCGCACCGTGCAGCGACACAACGTGCTACGCCAGGCCGAACACGTCATGCACGAGTTCGC
GCACACCAAGGCGCTCCTCGAGATTCAGTACGAGAACGAAGTCGGCACCGGTCTCGGGCC
CACCTTGGAGTTCTACGCGCTGGTCTCGCAAGAACTGCAACGCGCGGATCTCGATCTTTG
GCACGGCAGCGAAAACTTCAAACAGAAGCCTAGCTCTTTCGGGGGTGAAATTGTGAAATC
GGGCGAAGCGGCGGCCCGCCTCGCTACTTCGGTACGCGACGGTTTGAACTTGGACGAAGA
ACGTACGCGCGCCACTTCACCGACGGACCGTGATAAAGATGCTCCCGAGCCGGCTGCCTT
CGTTTCGTGGCCGTGCGGACTCTTTCCGCAGGCGCTAGGTCGCAACGCCCGCGCATCTCA
TCTCTCTCGAGTCAAAGCCAAATTCCGCTTCCTTGGAAAGTTCATGGCTAAAGCGGTTAT
GGATTCACGAATGGTGGATATTCCTCTGTCGGTAACAATGTACCGATGGGTGGTGAACGA
AGAACGTTGGCTAAGCTTGAGCGACGTGCGACACGTGGCGCCCGAACTGTGGCGTTCTCT
GTGTCGTTTACGGCGCGTCGCCGATCGCGCACAACACATCGCAGCCGACACCCGACATAC
ACAGGACCAGAAGAATCAACTTATAAGTAACCTTGAGCTAGATGGATGTCCGATTGAAGA
GCTCGGGCTCGACTTCATATTGCCCGGAGACGGATGCACGGAACTGCGTCGGGGTGGCAG
AGACATGCCCGTCACTGCGCACAATTTGCAAAATTATATTAATCTCGTAACTCATTGGCT
ACTTTTTGAAGGTGTATCAAAACAGATGGAAGCTTTCAAAGAAGGATTTGAGTCGGTATT
TCCTTTGAGTAACTTAAAAATATTTTATCCTGAAGAGTTGGAACAAGTGTTTTGCGGAAG
TCCTTCAGGTGGTCGTGACCAACGATGGGATCCACGTATGCTGGCGGAATGTATTCGTCC
GGATCATGGATACAATGCAGAATCGCGGGCTATACGCATGCTTATTGATATTTTGGCTTC
GTACAACCGTGAAGAACAACGACACTTCTTACAGTTTGTTACTGGAAGTCCAAGGCTGCC
AACTGGTGGATTCAAGGCATTGAATCCACCACTAACTGTGGTGCGTAAATCGCTGGAGTC
TTCATTGGATCCGGATGAATATTTGCCATCAGTGATGACATGTGTCAACTACTTGAAGCT
GCCAGACTACAGTAGCGCTGAGGTGATGCGCGCTAAGCTACGGCTCGCTGCTTCTGAGGG
ACAACATTCGTTCCACCTTTCATAATTGGCTCCAAGTTTCCTCTTTTACTGTGATTACAT
ATATCGCCCCCTTTGTATACACGTGTGAATGCGGTTAGTGATATCTTATTGTAATTTTGT
TATAGTCAGCAGTGTATAAGCTCTGGACAAATGTTTATGTGCAATCAGAACCTATATTTT
ATAATGTGATGGACACTGAAAGTGCGGCGTTCTTAGTTTTGTTCATATTTTCGATTCTTT
TAGATTACATAGATATGTTTATATCATATTTTGCGTTAATTTAATGTGATAGCTTTGTAT
ATTTCTTTTTGAATACACCAGAGTGACGCTCTTTAGATTAGATGTGGCGTGGATGTAGAC
TGTGGCAAATATAATATATCTAGATGGCTATTTTATCTGTTTACAGAAAACATTTCAAAT
AACTATTGTAACTCACAATTTTCCCAAGAAGTCGATTTAAATAATAATTATATATGGTAA
AGCTGTAAAAGCTTCAGTAATGTATGTTAGAAATGTACTGTCACTTGATGGGGTCACTGA
TGGCCTCTAACTTTATATTGTCCTCCTTGGAGTGTCCTCTGAATTATATGGCATTTATTA
CCAAACGGTGTATGTTTTTGATTCAATAAGTATCATAAATGAGTAAATGAAAAGTG
(2756 bp)

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