SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c29152_g1_i1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X3_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:13.91 TPM:10.67
ORF EntryO_BomoASG15606_3prime_partial:A_BomoASG_c29152_g1_i1
Sequence
(Nucleotide)
CGGAGGGCGCGGCGCCGGGCGGCCCAGCGGCGCGTCCAAGACCGCGTCGTTCCTGTCGTC
GCTGAACCCGTCGCGCTGGGGCCGCGCGCCGCACCAGCACAAGGACACGGCGCTGCTCGC
CTCGCCGCACGCCAGCGCCAACCTCACCGTGCAGAACAAAGAGAAAGTCCGCGAGTGGAT
TTCGTGGTCGGCGCGTCGGCTGCGCTGCGAGTGGGGAGCGCTGGGCGGCGGCGCCGGGGC
GCTGGAGCAGCTGGGAGCGCTGGCGGCCGCGCTGCCGCACGCTGCGCACTCGCGCGCCGC
CCTGGCACATCTCCGCGACACGCTGCTGCATCACGACGTCTCGCCCTTCGAGGTGAACCA
TTCCGGAGTATTGGGCGCCCTGCACCAATACCTAACTGGCTTCGATATGGAAGTGGATGG
TTTGGAAAAGCGCGACGGCGATGGCGAAGGACAGGAGTCCGCTGATTTGGTGCAAGCGTG
TGAAGAGCGACTGCGTTTATTCTTACATGTGTTTGCTGAGATGCCCATTGAACCTGAAGT
AAACGATTGGAAAGAGTCGTTGGGCAGCAGCACGGCCTTGTGTGCGCTGGTGGCGAAGGT
GAACGCGTGCGTGTCGCATCTCGAGCAGTTTCCGGTGCGAGTCCACGACCTACCGGCCCG
TCCCGCCACGTCCGCTCTTAAATTCTTCAACACGCACCAGCTCATGTGTGATCTCAAACG
TCATCCTTCGTGCAACACTTTGAAGCAATGGAAGGGTGGTGTAGTACGAATAGACCCATT
AGCTTTAGTTCAAGCCATCGAGAGATACCTGGCGCAGCGCGGGTACGCCCAGGGCCGCAC
GCGCTCGGACTCTGCGGGCGCGCACTCGGACGACGAGCCCGCCTCCGATGACGACGTCGA
CGACGCCCTGCCCGCGCCGCCGCAGCCCACCAACGATTCTGAACACAAACTCGAGTTCCT
GATCGGCGATACAGTGCTGCCGTACAACATGACCGTGTACCAGGCGGTGCGACAGTTCGG
GGAACAAACGGACGCCGACACGGACACCGAAACTCCATTGGCGAACGCGGGGATATGGGT
CCAGACACACACGATATATTATCGCGCCGTGGAGCCAAATGAACAACCGCGTTCCGAAAG
CACTCCGTCAAAGAAAGGCAAAGGACAACCCACAAAGATCTCATCCCGACGAAAACCTGA
TTTACTCTGGAACGAGGGCGCGGTGCCGGCGCGTGCGTCATCGCTGGTGGTGATGGTGCG
CGCGGCGCTGCTCACGGAGGGCGACGTGCGGGACGCCTCGCTGCCCGCGCTGGGCGTGCT
GCGCGCCCTGCACGCCCTGTCGCGCCACTGGCACGCGCTCTACCGCGCCGCCTGTCTGCC
GGACCACCGCCCTCTCGTGCCGCACGCAGACTTCATCAATGCTAAGCTCGCCGCCAAAGC
CAATAGACAGTTGCAAGATCCATTAGTAATAATGACAGGCAATCTACCGCCGTGGCTAAA
AAAGATCGCCTACGCATGTCCGTTCGTGTTGCCGTTCGAGTGTCGGCACTTGTTATTCTA
CGTGGTGTCTTTCGACCGCGACCGCGCCCTGCAGCGGCTGCTGGAGGCGGGCGGGGAGCG
CGGCGGGACGGCGGGCGGCGAGACGGAGCGCGTGGCGCCTCGCCTCGACCGACGCAAGCG
CACCGTGCAGCGACACAACGTGCTACGCCAGGCCGAACACGTCATGCACGAGTTCGCGCA
CACCAAGGCGCTCCTCGAGATTCAGTACGAGAACGAAGTCGGCACCGGTCTCGGGCCCAC
CTTGGAGTTCTACGCGCTGGTCTCGCAAGAACTGCAACGCGCGGATCTCGATCTTTGGCA
CGGCAGCGAAAACTTCAAACAGAAGCCTAGCTCTTTCGGGGGTGAAATTGTGAAATCGGG
CGAAGCGGCGGCCCGCCTCGCTACTTCGGTACGCGACGGTTTGAACTTGGACGAAGAACG
TACGCGCGCCACTTCACCGACGGACCGTGATAAAGATGCTCCCGAGCCGGCTGCCTTCGT
TTCGTGGCCGTGCGGACTCTTTCCGCAGGCGCTAGGTCGCAACGCCCGCGCATCTCATCT
CTCTCGAGTCAAAGCCAAATTCCGCTTCCTTGGAAAGTTCATGGCTAAAGCGGTTATGGA
TTCACGAATGGTGGATATTCCTCTGTCGGTAACAATGTACCGATGGGTGGTGAACGAAGA
ACGTTGGCTAAGCTTGAGCGACGTGCGACACGTGGCGCCCGAACTGTGGCGTTCTCTGTG
TCGTTTACGGCGCGTCGCCGATCGCGCACAACACATCGCAGCCGACACCCGACATACACA
GGACCAGAAGAATCAACTTATAAGTAACCTTGAGCTAGATGGATGTCCGATTGAAGAGCT
CGGGCTCGACTTCATATTGCCCGGAGACGGATGCACGGAACTGCGTCGGGGTGGCAGAGA
CATGCCCGTCACTGCGCACAATTTGCAAAATTATATTAATCTCGTAACTCATTGGCTACT
TTTTGAAGGTGTATCAAAACAGATGGAAGCTTTCAAAGAAGGATTTGAGTCGGTATTTCC
TTTGAGTAACTTAAAAATATTTTATCCTGAAGAGTTGGAACAAGTGTTTTGCGGAAGTCC
TTCAGGTGGTCGTGACCAACGATGGGATCCACGTATGCTGGCGGAATGTATTCGTCCGGA
TCATGGATACAATGCAGAATCGCGGGCTATACGCATGCTTATTGATATTTTGGCTTCGTA
CAACCGTGAAGAACAACGACACTTCTTACAGTTTGTTACTGGAAGTCCAAGGCTGCCAAC
TGGTGGATTCAAGGCATTGAATCCACCACTAACTGTGGTGCGTAAATCGCTGGAGTCTTC
ATTGGATCCGGATGAATATTTGCCATCAGTGATGACATGTGTCAACTACTTGAAGCTGCC
AGACTACAGTAGCGCTGAGGTGATGCGCGCTAAGCTACGGCTCGCTGCTTCTGAGGGACA
ACATTCGTTCCACCTTTCATAATTGGCTCCAAGTTTCCTCTTTTACTGTGATTACATATA
TCGCCCCCTTTGTATACACGTGTGAATGCGGTTAGTGATATCTTATTGTAATTTTGTTAT
AGTCAGCAGTGTATAAGCTCTGGACAAATGTTTATGTGCAATCAGAACCTATATTTTATA
ATGTGATGGACACTGAAAGTGCGGCGTTCTTAGTTTTGTTCATATTTTCGATTCTTTTAG
ATTACATAGATATGTTTATATCATATTTTGCGTTAATTTAATGTGATAGCTTTGTATATT
TCTTTTTGAATACACCAGAGTGACGCTCTTTAGATTAGATGTGGCGTGGATGTAGACTGT
GGCAAATATAATATATCTAGATGGCTATTTTATCTGTTTACAGAAAACATTTCAAATAAC
TATTGTAACTCACAATTTTCCCAAGAAGTCGATTTAAATAATAATTATATATGGTAAAGC
TGTAAAAGCTTCAGTAATGTATGTTAGAAATGTACTGTCACTTGATGGGGTCACTGATGG
CCTCTAACTTTATATTGTCCTCCTTGGAGTGTCCTCTGAATTATATGGCATTTATTACCA
AACGGTGTATGTTTTTGATTCAATAAGTATCATAAATGAGTAAATGAAAAGTG
(3653 bp)

- SilkBase 1999-2023 -