SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28934_g4_i1
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		transcriptional_regulator_ATRX_homolog_isoform_X2_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:7.07 TPM:5.42
ORF EntryO_BomoASG15104_5prime_partial:A_BomoASG_c28934_g4_i1
Sequence
(Nucleotide)
GTTCTTTTTTCACGACTGTTTTGGATTGTTTAACTACCTTGTCTAAATTGCCGATTTTTC
TGACGGAAAGGGCATTATGTGGATTGTTTTTATTTATTATAAATGTACTAATATGTAATA
ATGTGTTGCAGTTGTGTTCAGTAACAGTTTCGGTCATATAATTGCTTAAAAAGATCCGCT
CAGCCATTTACATGAAAGATGGTCCGATCTAAGACGAAGCCTGGGAGCAGCATCAGCCAA
AATTCAGACACTCAGGATGACAAAGATGTTGATAGGCTTACAAACTTGGATGCGTTAGAG
AAACCTCGTCGACGTGAAACTGAAGATAAGAGGAGTAGAACAAATAACAGAGCAAGATCT
AAAGCAAACGAAATAATCGGTGAACAGATGCTCGAGCCGGACACTAGTTCTGATGTTGCT
TCAGAAGCCGGGAGCGATGTTTGTGAAGAAATACCACCGGTAACATTTAACAATGGTATT
GAGCATCTCAGTAAAAGTGAACTGCTGGGAGAAAGTGACTCGTCGATTTCAAATGAAAAA
GAAAAAAGTTCAGAGAACACACCGACAGTGGACGAGTCTGAAGATGACAATTTAAAATCA
AAACGACGTAAGGCGAACGCCATCTCGTCGGACTCTGAAGCCGGTTCGTCTCGCAAGAAG
GAGGACCGAGAAGTCAAGCTGAGCGACTTCGAGGACTCTGAGGAGAGCTCTGAATCCAAC
AAGAAGAGCAAACGGAAGAAGAAGGGAAGTGAAAGTGACGCGTCCGGGTCTTGTTCCGAT
GGAAATAAGAAGAAACGGCGTAGAATCAAACAGATAAATGAGAGCGATTGTTCAGATTCG
GAAGAAGAGACTGAGGGTAGGAATAAACATGGAAGGAAAAATATACGTAAGGTTATGGGT
AAAGACCAGCTGGAAGAGGCTACCAAAAAAGCGGCGCGCCAGGAGAAGGAGAGGATTGCT
AGAATCGCTGAGAGACAGAAATTGTACAACAATCTGGAATTTGATGAATCTGGAAAACCT
GATGAAGTGGTCTTGGAGAAGGTTGTTCTTGATTTCGACCCAGAGACCAAGGAGCCGCTC
ATACAAGTTGACAGAGGCCTTGTCAAAAAACTAAAGCCACATCAGGCAAACGGAATAAAG
TTCATGTGGGATGCGTGCTTTGAAAGTGTGAAACGTATAAAAAAGGACAAGGGCTCTGGG
TGTATTTTGGCACATTGTATGGGCCTGGGAAAAACGTTACAAGTGATATCGCTGACGCAC
ACGCTGCTGACGCACGGGTCGCTGACCGGCGTGAGCAGGGTGCTGGTGGTGTGCCCGCTG
TCCACGGTCCTCAACTGGGTCAACGAGTTCCGCATGTGGTTGAAACACGCCGAGAACAAC
TTTGAAGTCGACGTGTACGAACTCTCCAGGTTCAAACAAAATTCAGAACGCGCATTCCAA
TTGAGTCAGTGGTACAAAAGCGGAGGTGTTTGCGTTCTCGGCTATGAAATGTTCCGGAAT
CTCTCAGCCGACAACACTAAGAAATTTAAGAAGAAAATGCTCAAGAACTTCCAGGAGAGC
TTGGTTGACCCCGGTCCAGATCTAGTAGTATGTGACGAGGGTCATCTTCTGAAAAACGAA
AAGACAAGCCTCTCGCAGTCTATGAACAAAGTGAAGACGCTACGTCGCATCGTACTTACT
GGGACGCCCCTACAGAATAATCTGAAAGAATACTACTGCATGGTGCAGTTCGTGAAGCCG
AACCTGCTGGGCAAGTACAACGAGTACCTGAACCGTTTCGTGAACCCGATCACCAACGGG
CAGTACACGGACTCCACCGAGCACGACATCCGCGTCATGAAGAGGCGCTCGCACGTCCTA
CACAAGATGTTGGACGGAGCAGTGCAGAGGAGGGATTACGGAGTGCTAGCGCCTTTCCTG
CCTCCGAAGCACGAATACGTACTCTTCATTACTCTCAGCGAAGTACAAGTCAAACTGTAC
CAACATTATTTGGAAAACTATTCACGAAGGCCGATGCCAGGGAAATCATCAGGATTCCTG
TTCCCCGACTTCCAGTCGCTGCAGAGGATATGGACGCATCCGCTCGTTCTCAAGTACAAC
TCTGAACGCTACGAGATTATGCAGCAAAAGAAAAGAGAAAGAGAAGAAGAAGACTCCGAA
GGATCACTTGTGGACTTCATTGACGACGACTCCACGCCTGAGGAAACTTCAACAGAGGAG
TCTTCCGACGACTCATCAGATGTGAGTGACGACAGTCAAAAAAAGAGTAAGAAGAAGAAA
GCAGCTAAGAAGAGCAAGGCGAAAGACTCTAAAGCTTCGACGCGTCGGGGGACCAGGGCC
AACCCAGTGGAACAAGAAGATCATCATTCTGACATCGAGGAAGTGGTTGAGGTAAAAAAT
GAAAATCCGACTGAGTGGTGGATCAAACTTGTCACCGAGGACGAGCTGGAAGACATGCGG
CACTCGCATAAACTTGTTCTGCTCTTCGACATATTGAGGCAGTGCGAAGCCATCGGAGAT
AAACTATTGGTGTTCTCACAATCTCTGTATTCATTGGACCTCATAGAACATTTCCTAGGT
AAAGTAGACGACGCGACTCAGGCAGGCCGGATCGATGAGAAACTGGGCGGACACATGGGT
TCATGGTCTCCCGGTATAGATTATTTTCGTTTAGATGGCTCTACGTCGTGCGAGAACCGC
TCCATTTGGTGTAAGAATTTCAACAGAGAAGATAATCCAAGAGCAAGATTATTCTTGATC
TCTACTCGGGCGGGTGGCCTCGGAATTAACTTGGTGGCGGCCAATCGCGTGGTCATATTT
GATGTGTCTTGGAACCCTTCGCACGACGTGCAGAGTATCTTCAGAGTCTACCGATTTGGA
CAGAAGAAACCTTGTTATGTGTACAGGTTTTTGGCCATGGGCACAATGGAAGAAAAAATC
TACGAGCGGCAAGTAACCAAACAAGCCATCTCGAAGCGCGTGATCGACGAGCAGCAGATA
GACCGGCACTACGCCGAGAACGACCTCGCCGAGCTCTACAAGTTCGAGCCCGCCCCGCTC
GCGCCCCGCGAGCTCCCCGCGCTGCCCAAGGACCGGCTGTTCGCCGAGATGCTGCGGGAG
CACGAGCTGCAGATTTACAAATATCATGAGCATGACTCACTATTGGAGAACAAAGAAGAG
GAGACTTTAACCGAGGAGGAACGTAAAGCCGCCTGGGAGGACTTCGAGAACGAAAAGAAC
AGACCGCCTCCCGCGCCCTTCCCCTCCGCCTGGCCCATGCACAATGGAATGATGCCGGGA
CTACTGGCGCAACAGCAGCAGCTGGCGTACGCGGTGGCGGCCATGCTGCGCAAGGACATG
CCCAACATCACCGACAGCCAGATCCGGGACATGTTGCCGATGATATACAACTCTAATCCT
GCGGTCGGTATGTTCGGTGGATACGATTACGGCATGATACAGAAAATGAGCGAAATGTAT
AAGTATGCGCAGCCCAGTATGATGAATCCTGCAATGATGGGCTCTGCTATGAACGCCGCG
ACCGGCAGCGGCTCGAGCGGCTCCAGCTCGCTGCAGTACGAGCCGCCCTGGCAGAGACAG
CAGCAACAACAACAACAAATGCGACTCCAACAACTCATGCAACATCAGAAC
(3651 bp)

- SilkBase 1999-2023 -