SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28653_g1_i1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		splicing_factor_3A_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:14.42 TPM:11.06
ORF EntryO_BomoASG14466_3prime_partial:A_BomoASG_c28653_g1_i1
Sequence
(Nucleotide)
CCGGCACCGCCTGTGCTGCTGCAGCCGATGTCCTCGCTAATGGTCCTGCCCCCCATGGCG
CCCCGACCTCCGCTCATACCGGCTCCAGTGGGTGCAGTACCACCGCCGGCGTTCAACTTC
GGAGCGGTAGTCCCTCCGGGCACAGTGGCGGAGCCCGAGGACGAGGGCCCGGCCGCTAAG
AGAGCCCGCACCGAGGACGCGCTGGAGCCCGAGGGCGCCTGGCTCGCGCGCCACCCCGGC
GCAGTCCCCCTGCAGGTGTCGTTGCCGGCGGCGCCTGAGCGCGCGGAGTGGCGGCTGGAC
GGGCGCGCGGTGCCGCTGACGCTGCCGCTGTCGGCCGCCGTCGCCGAGCTCAAGGCCATG
CTGCAGCGCGCCACCAACATGCCCACCGCCAAGCAGAAGCTGCACTACGAGGGTCTGTTC
TTCAAGGATACTAACAGCTTGGCGTACTACAACGTGCCCCCGGGTGCCGTCATACAGCTA
CAGATCAAGGAACGAGGCGGTAGAAAGAAATAATACAAAAAAATACTATAAAAGTTAATG
ATAAGGAGATCGGAAGAGC
(559 bp)

- SilkBase 1999-2023 -