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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28555_g1_i1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:21.80 TPM:16.72
ORF EntryO_BomoASG14211_complete:A_BomoASG_c28555_g1_i1
Sequence
(Nucleotide)
GAGGTTATTTATAGCGTCATTTGGGCTGTTGTTGTAAATTGTTGTTCATAGTGCGTAAAT
ATCGTCTACTTTTCTGAGAGAGTAGCTGTAAACGGAAGGCACAATGCCATCTATAGATGT
AATGCTACCACCGGGGCAGTCGTTAGAGATCCCGGAAGATCCGCCTCCACCACCCCCTCC
AGTCATTGGCATTATTTATCCACCACCTGAAGTCAGAAATATTGTTGATAAAACTGCCAG
CTTTGTGGCTCGTAATGGTCCTGAATTTGAAGCTAGGATCAGACAGAATGAGCTGGGCAA
TCCAAAGTTCAACTTCCTTAATTCAGGGGATCCCTACCATGCTTACTATCAGCATAAAGT
CAGAGAGATCAAAGAGGGAAAAGTTCCCGAACCAACTGCACCACCAACTATGCCATCAGG
ACAGCAACGAATGGGTCTCGCTCCAGCCACAGCGGCCCGCCAGCAGGAGCTCCTCAAGGC
AGCTGCTCCTGCAGAACTGCCTCCGCCGCGCGACCCACCACCAGATTTCGAATTTATCGC
TGATCCACCGTCTATATCGGCTCTGGAGCTCGACATAGTGAAATTAACCGCGCAATTTGT
CGCCAGAAACGGTCGTCAGTTCTTAACGGATTTAATGAAGAAAGAGGAGCGTAATCATCA
GTTTGATTTTCTTCGTCCCCAGCATTCACTGTTCCAATACTTCACGCGTCTGCTTGAGCA
GTACACGAAGGTGTTGCTGCCGCCAAAAGAACTAGTATCAAAGCTGAATGCTGAGATACG
CAGCGGGATATTAGAACAAGCTCGCAGTCGCGCTGCCTGGCACGCGCACCAAGCCAAGCG
CAAGGCCGCTGACGAGGCCAAAATTGAGAAAGAGAGGCTCGCGTATGCCTCCATAGACTG
GCACGATTTTGTCGTTGTTGAAACTGTAGATTACCCCGCAGGGGAACCCGGAGACTTCCC
TCCTCCGACCACTCCACTAGAAGTCGGAGCCCGCGTCCTCGCCCAAGAGAGGGGTGAAGA
TATAATACGGAACCAGAATGACGACGATGATACTGAGATGCAAATTGAATCCGAATCGGA
ATCGGAGTCTGATGAGGAACTTGCGGAAATGGAGGATCGAACTCAGTCCCATCGGCCGGA
CGATAACCGCGTGCAAGACATGGAAGAGGAAAGCTCGACTTCGGAGTCCGAGACGGAGCA
AGACGCCCCGCGCGCGGACGAGGCGCCCCTCCCGCCGCGCCCCGACCGCGTCGTCGTCAA
GAAGTACAACCCCAAGGAGGCGAAGCCCCGCGCCGCCGCCGGGGACGAGTGGCTCGTGTC
GCCCATCACCGGCGAGAAGATCCCCGCCAGCAAGGTGGCCGAGCACGTGCGCATCGGGCT
GCTGGACCCGCGCTGGCTGGAGCAGCGGGACCGCGCCGCCGCCGAGCGCACCGACCGGGA
CGAGGCGCTCGCCCCCGGGGCCGCCATCGAGGCTTCGCTTAAACAGTTGGCGGAGCGTCG
TACTGACATCTTCGGTGTAGGGGACGAGGAAACGACCATCGGTAAGAAGATCGGCGAGGA
GGAGAAGAAGCGCGACGAGCGCGTGACGTGGGACGGGCACACCTCCAGCGTGGAGGCCGC
CACCCGCGCCGCCAGGGCGCACATCACGCTCGAGGACCAGATCCAGCAGATACACAAGGT
TAAAGGTCTACTCCCCGACGAGGAGAAAGAGAAAATAGGTCCGAAGCCAGTGACCGGGGC
AGCCCAGAGCCGGGCGGGGCGTCCCCCCGCGCCCCCCTCTGCCCCCCGCGCTGCTCCG
(1798 bp)

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