SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28541_g1_i3
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		titin_isoform_X1_[Bombyx_mori]
Ontology
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0002155 P regulation of thyroid hormone mediated signaling pathway
GO:0002361 P CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005876 C spindle microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007623 P circadian rhythm
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0021794 P thalamus development
GO:0031065 P positive regulation of histone deacetylation
GO:0032922 P circadian regulation of gene expression
GO:0035033 F histone deacetylase regulator activity
GO:0035257 F nuclear receptor binding
GO:0040014 P regulation of multicellular organism growth
GO:0042632 P cholesterol homeostasis
GO:0042826 F histone deacetylase binding
GO:0042974 F retinoic acid receptor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0051225 P spindle assembly
GO:0060318 P definitive erythrocyte differentiation
GO:0072362 P obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
Transcript
Level		FPKM:3.93 TPM:3.01
ORF EntryO_BomoASG14185_complete:A_BomoASG_c28541_g1_i3
Sequence
(Nucleotide)
CTGAGCGACGCGCGAAACGAACGCGCGTCCGGCGGGCGACGTTGCCAGCTCTCCACAAAA
AAAAAACCAGATTCGACCTTCTTAGGACCCCCGGTTTTTTTTTGTTTAGCCGCGTTATCA
TTCGGGAAGCAGTGTATCGAGGTCCTTATCCGTTTGTGAGATGGTGTACACATCACAGGT
GTAACTGAGTGTAGTGTTCGTGTCCTAGTGTATTATGGTGTGGTCTACTCCTTCGGGGGA
AGTGCTGATTGACATCGTTACGAGGCCCGGGCAGTCTGATCACGGGCACAGCGGCGGCGC
GCTGTCGTACGGCGGCAAGCCGGCGGGGACTGTGGTCGCGCCGCCGCAGCCCCGGCCTCC
GCCCACAGCGCCCTACGCATCGCAGCCCTATCCGCCGGCACAGCTGCGACTGCACCAGCC
TGGCTATGGCTCCGCGGCGCTCTCATACAGGGATGGAAGCTACGCCCGAAGCGGTGGTGC
GGTGGGAGAGTACCGCAGCGGGGGTCGAATGTCCCTGCTCGGCGCCGCGTACCTCCCGCC
CCCCGCGCCGGCGTCTCACCACCCGCCCCCTGCCGACCCTCCCCCCTTCAAGAAGATCCG
TCTTACAGCTGAACGTGCGCCCATCACGCAGTTGACTCATCACCTGCCCCTCAGGGTCGA
TACTAGAGAACCGGTGAACACTTACAACACGGTCGAGGTGCTTTCGCCGAACCCGCCCTC
GGAGACCTCCGGCGAGGACCAGACGCTCCGGACCACTAAAGATGTTCTCCTTAAGCAAAT
ATCTAAGGTGGATCGAGAGATGGCGCTGGTGGAGACATCCCTTGCGAAGCTGAAGCGTAA
ACAGGAGGAACTGCAGCAGTCCGCCTCCAAACCAGCGAGGGCCGAGGAGCCCGAGGAAGC
CCCCTCGCGGCATCGGAGCCTCGCGCAGTGTATATACGCAGAGAACAGGAAAAAGGCGGC
TGCCGCCCACGCCCAGCTGGACCACCTGGGCCCCCCCGTGCCGTACCCGCTGTACAACCA
GCCCCAGGACACGGAGGTCTACCACGAGAACATTAGGAAGCACAGATTATTTAGGAAAAG
ATTGATCGTACATATACGGAGAATAAAGGCTGAGTCAGAAAAGAGAGAAGATGTATTAGC
AGATGAGTACACGAAGCGAGCGGCTGAGTGGGCGCGAAGGGTCGAAAGAATCGAGCAGAG
TCAAAAGAGGAAAGCGAAAGACGCGAAGAACAGGGAATTCTTCGAGAAGGTGTTTCCCGA
GCTGAGGAAGCAGCGCGAGGAACGCGAGAGGTTCCACCGGCTCGGAGCCAGGGTGAAGTC
CGAGGCGGAGCTGGAGGAGTTGGCGGATGGCTTGCACGAGCAGGAGCATGAGGACAAGAA
GATGAGGGCGCTCACCGTGGTGCCGCCGCTCCGCCGGGACCCGCTCGACACCACGCCGAT
CTACCTGGACACCAACACCTTGATCCCGGGAAGGTGTCTCGACATGAAGTCGGAGCACAA
GGAGCTACAGCTCCGCAACATCTGGTCGCAGAACGAGAGGGAGCTCTTCAGGGAGAAGTA
CCTTCAGCACCCCAAGAACTTCGGAACGATAGCCTCGTTCTTACCCAGGAAGAATGTCAG
AGACTGCGTAAGATTCTACTATTTATCGAAGAAGTCTGAGAACTACAAGCAGCTGCTGCG
CAAGCCCCGGCAGCGTCGCTCGACGCGGAACCCGCAGCGCGCCGCCCCGGAGCCCGACCT
GCCCGCCGGCGTCACCACGCGGTTGCAGCGCTCCCAGGGAGCTCGTTGTGCAGACGTGAA
GGAACCGGCGATGGAGGAAGGCGCGGGTGCGGTATTGATCCCGGAGCCCTCCGCCGTGCC
GCTTCCGGCCGGTGCTGCGCCCTCACAGCCACTCAGTTATGCGGCAATCAGGGTCGAATT
AGCGAGAACGCCGCCTCTGCCGCCCTCCCCTCCGCCGGCTTCGTCGGCCCCCCTGGCGGT
GACCACTTCATCCTCGATGCCGCTGACGATAGCATCGATGGACAGCCCCTCCTCCATCCC
CATACCGCCTACTTCGCCTCCCCCCACTGCAACGCTCATCGAAATACCGTTATTGACGAC
GGCGGCCACGACCGAAACCACCATCACGATCACAGCTTTGAGTTCTGTACAGGAGTCGTC
TCCGCCCAGCGCGCCTTCGCCGGTGTCTATGCCGTCGCCAGCTTCGACACCCGTGTCTAC
GAGCCCGTCCACAATCGCGCCAGTGTCGACGTCGTCTTCCTCCATGACGACGACCGCGCC
GAGCACGACCACCGTGGCCACGACGACGCCCCCCACCGTGGTCGTGTCGGCCGTGGTCAC
GTGCACGCCTTCCTCGACGCCGACGTCCGTGCTGGTCCCGGCGCCGGCGGTGACCGCGGT
GGCGGCGGCGGGCCCGACCAGTGCACCCCCCACCCCGCAGCCGGCGAACCCTCCCACGCC
AACACAACCCCCTCCAACCCCGGAGACAGCGGTTATAGAGAGGATAGGGACGCCTTCCAC
ATCGACGACTTCCACCACCACGAGCACCACGACGGTGACCGCGTCCTCGTCGAACTGCGC
CGTCTGCAGCGCGCCAGGAGCCACCAGAACCGTCTCGAGGTCAAGGGCTGCTCACTACGG
ACTTAAGGAGGAGTCGGTAGGATCTCGCGTGTGTGAGGCGTGTCACTGTCGCTGCGTGAG
GTCGCGGTACACGCGGTGTCCGGTGCCCACGTGTCCCGGACCGCGCGTCAGAGCGAAACG
GCTGCGCCACTTGCCACCGCGGTGGCACGACCTCGCCATCGAACTCAAACGACCACTCAT
GGAGGAATTCCAGATCCCGAGCGAGTTGAGCAAGTGCTGTTTGTCTTGCCTGAAACGTAT
AACTCGGCGGCTGGAGGGCGCGGGCCCGGGCTGCGAGCCGGCCGAGGACGAGTTCAGGGG
GTGGCTCCGCGAGCACGGCACCGCCTGGGAACAGATCGCGGCCGTCAGCGGACGGACGCC
CGCCGCCCTCAAGGCTTACTACTTCACCTACAGAAAAAAGCTGCAACTAGACGCAGTGGT
GAGCGCCCGCAACAGCGCGAGCGCGGCCGCGCGGTCCACCAGCGAGGAGAGCGGCTCCTC
CGAGTCCGAGGGCGCCGCGCCCCCCGCGCCCGCCCC
(3156 bp)

- SilkBase 1999-2023 -