SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28438_g2_i1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		argonaute_2_isoform_X1_[Bombyx_mori]
Ontology
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004521 F endoribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007279 P pole cell formation
GO:0007349 P cellularization
GO:0007367 P segment polarity determination
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0010526 P negative regulation of transposition, RNA-mediated
GO:0016032 P viral process
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0033227 P dsRNA transport
GO:0035071 P salivary gland cell autophagic cell death
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035190 P syncytial nuclear migration
GO:0035195 P gene silencing by miRNA
GO:0035197 F siRNA binding
GO:0045071 P negative regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0051607 P defense response to virus
GO:0070578 C RISC-loading complex
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0098586 P cellular response to virus
Transcript
Level		FPKM:27.76 TPM:21.29
ORF EntryO_BomoASG13927_complete:A_BomoASG_c28438_g2_i1
Sequence
(Nucleotide)
GCAATCGTTGTGTGATTGTGTGTGTGTTTTTATGTAGATCCCTATATACTATATACCTAG
TACCTACTCATTCACAATAACATATTCGATCAATTAAATTTCGCGATAGCTTTATTGCTG
AAGTACACAATTGCACACCTTCATAAAGATTTGTACGAAGAGATCATTACCACTTTGTAA
TCATGGCTAGAGGAAAAAACAAAGGTGGTAAGAAAGAGGCACCTGATTCTACGAAAACCC
CTTCTTCTGAAAGTCAGCCTTCAGAAAGTCAACCTTCAACATCCCAAATTCCAACTACAG
AACCAACAACTACTATTGAAGATGATTTAGGGGGCCTTGGTCTTGGTGAATCTAGAAAAA
GACGGCCCAGGAAGAAGCCAACTGAAAAACAAGAATCATTAGCTCAAGCTGAATTGTCAA
ACCCAAAGCTTACTCAAACTGATAATCCGAAAGCTGAGGTTCCTAAAACAGAGGCTCCTA
AAACCGAGGCTCTTAAACCTGAGGCTCCTATCCCTGAGGCTTGTAAATCTGAAGCTCCTA
AAAGTGAAGAGTCCAAAATCGAAACTAGAGGTTCTAAACCAGAAGCTGCTGCTGATAAGC
CTCAAGATGATGATGATGGTTTGGGTTTGGGGTTAGGTGGTGGGGGACGAAAAAAAACTC
GCAGCAGGAAACCTAAATTTACAGCTGTAGAAACAGACATCAAATATTCAAAAGCTCCAT
CAAGTGAACCTGCAATTCCAGGACCATCACAAAGTAAACCAATAACGTCAACTGCATCAC
AGCCTATTCAATATGTACAAAATAAACCAGAGGTCAAAGTGGCCCCTGCAGCCCCTGTTT
TGTACAAGATACCAGATAAAATATTGTCTCCACCCTCAAGAACTGTGCCGATTTTAACTA
ATTATTTGGCTATGAAAATAACAAAACCATTGAAAATTTACCGTTACGACGTCACATTCA
AACCAGATAAACCGAAGAAATTTATTGCACAAGTGTTTAAACTGGTAAAGTCTAAAGAAT
TTCCTAAAGAAATCCTTGCCTTTGATCAAACAAAAAATTGTTATTCACTGACTCCGCTGC
CAAAAATCACCACTGAGAGATATGGTGTAAAAGTGGTGATCAAAGATATGAACGGTAAAG
ACATGCCGTTTGAAGTGTCATTCAAAGCTAGTGGTATAGTAGACTACAATAATGTTCTGA
AGCATATGGCAACGGGTGGATCATCCCTTAATGCACCAACTGACACCATACAATGTATTG
ACATAGTGTTAAAACAAGGAACATTGGAATCATATGTGAAAGCAGACAGACAATACTTCA
TGCGTCCTGCATCTCCGATTGACTTGGGCGACGGGCTCGAGATGTGGACTGGTTTATTCC
AATCTGCTATATTTACATCGAAAGCCTTCATCAACGTTGATGTTGCACACAAAGGTTTCC
CAAAGAATCAACCTATGATTGATGCTTTCACGCGTGATTTTCGCTTGGACCCCAACCGTC
CAATGGATCGGCAACCAGGTCGTGCTGTTGAAGCTTTCAATGAATTCATTAGAGGGCTTA
AGGTCGTATCGAAGATACTTGGTACCGGACCTTCTTCGGGACAATTACGCGAGCACATAT
GCAACGGGGTTGTCGACCCACCGTCACGTCAAACATTTACGTTGGAGAACGACAAAGGAC
CGCCGGTTAGGATGACCGTATACGAATATTTTATGAAAGAGAAAAAATACAGGATTAAGT
ATCCGGACTTGAACTGTTTGTGGGTCGGCCCGAAAGACAAGAACATATATCTACCGATGG
AACTAGTCGAAGTTGCATATGGCCAGGCCCGTAACAAGCAATTAAATGACAGACAATTGT
CGACAATGGTGAGAGAGGCTGCAACCCCACCTGATGTACGGAAACGTAAGATTGAGGAAG
TGATTCAGAAGATGAATTACTCGAAGAATCAATTCTTCAAAACATACGGTTTGGAGATAG
CCAATGAGTTTTATCAAGTTGAAGCGAAAATTCTCGAAGCGCCCACATTAGAAGTGGGTC
CACGGCAATTTACTGTACCAAAGAAGGGAGTATGGCAGGCCAACTGTCTTCTGAAACCGG
AAGCTCTGAATTCATGGGGCTTCATTGCCATAGAATTGGATCCACGTGGATGTAATTATG
AAGACATCGTGTCGAAGCTAATGAATACCGGTCGACAAATGGGCATGAACGTGACCCAAC
CAAAGATGGCTTGCTTCAACATCCGTATAAATGACCTGCACAAGAGTATGCTGCACGCTC
TAGAAAAACAGGTCAATTTCCTGGTCGTGGTCGTTTCTGGACGGGGCCGCGATTATTATC
ACAAGCTGAAACAGATTGCCGAACTCAAAGTGGGTATACTGACGCAGTGTATCAAAGAAG
ATACCGCCACGCGCCGAATGAACCCACAAACAGCTCGGAACATTTTACTAAAGGTGAATT
CGAAGCTTATGGGAATAAATCAGGCATTGGAGAATCGTTCCATTCCTCAGTGCTTAAAGG
GTGGGGCTGTGATGATCGTGGGCGCTGACGTCACGCATCCATCGCCAGATCAGAGTAATA
TACCGAGTATCGCCGCCGTAACCGCCTCGATGGATACGAAATGCTACATATACAACATCG
AACTGAGTATACAGACACCGAAGAAAGAGATGATCGTTCAGTTTGAGGACATAATGGTGG
ATCATTTCCATGCTTTCAAGAAAAGTCAGGGGATTCTGCCGAAGAAGGTGTTCGTGTTCC
GTGACGGGGTTTCTGAGGGTCAATTTGCTGAGGTAATGAAGAGTGAACTGACTGGATTGC
ATCGCGCCTACCAACGTGTCGCGGGATTGAACGCTAAACCAGAAGTATTGTTCATTCTTG
TACAAAAACGTCATCACACGAGATTCTTCCTGCCCGGGAACAACGCCCGTTTCAACGTCG
ATCCGGGGACTGTGGTCGACCGTGATATAGTACATCCACGTGAATTGGACTTCTATTTGG
TGTCTCACCAAGCGATCAAGGGCACGGCTCGTCCGACGCGCTACCACGCCGTCTGCAACG
ACGGCAGGATCCCGGAGAACGAAGTGGAGCACCTCGCGTACTACCTGTGCCATCTGTACG
CGCGTTGTATGCGCGCCGTGTCATACCCCGCGCCGACCTACTACGCGCACTTGGCCTGTC
TGCGGGCTCGCTCGCTCACCTATGGCGAGATATTCAATAATAACGATCTCGAGAAGAATC
CCAAACGTCTCCGGGTCCTCGACAGCATGCTGAAACAGAGCCGTATGTTCTTCGTCTAAC
AAGATGATATTTTAAAAATGTATATGTAATCACTATTTAATAAAACACGTATAACAACGA
ATGACTTCATTCGTAATCTTATTATATTAATATCAATAACCATGCCTTTTGCAATGAAAA
TTATAAACACGTCTCTTACCCTATAAATATGATTGTTTCATGACAGAAATTAGATAGCTT
TTTGTGTAAAATCAAGATTTTTTTAATGAAAATATAAAACGTATGATTTTTTTAAGGAAA
ACTTCTTTGAGTTAATGAAAAATTTAAAAACTAATGTTCTTTGTACCGAGTTAATCCGGT
AGGTTTCGCTCGCACAAAATACAGAAGATAAACCAAAGAAGTTTCACTTCTTAGTTTTAC
AGATTTGCATGTGAGACTCAAATAGCCTCAAGCGCTTTTTAGATCGCGGTTGTCATGTAA
AAACCATAATATATTGTATCTCGACATCGGAGGTATAAACTCTGATATAAATTGTTTCAT
CTGTACAAATTGAGTGACTTAAATTATAATTGGTCCAGGATAAGATGTCCGAGTTTGGTT
AAGACCCTACACCATCATCATATTCTCAAATAATATGATATGGTGTTGTTTTGCGGAGTA
TATATTGTTTACTCTTGCGCTAGGATTCGTTTTATCAGGTTCTGATGCTTTGACACGCAT
TTATTCGTCTGAAGTCGAGATGTTACTGCTTATTTGCATCTGCTTTTACTGGTGGTAGGA
CTTCTTGTGAGTCCGCGCGGGTAGGT
(4046 bp)

- SilkBase 1999-2023 -