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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28186_g1_i1
Scaffold_idBomo_Chr7
NCBI non-redundant
(nr)		probable_DNA_mismatch_repair_protein_Msh6_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
Transcript
Level		FPKM:3.33 TPM:2.56
ORF EntryO_BomoASG13385_3prime_partial:A_BomoASG_c28186_g1_i1
Sequence
(Nucleotide)
GTTTGCGCCACAGGTTTGCGCCAAAACGAATATTACTTTGATTTGATTAGTACCTACATA
TTACATACCAAATCCAAATACTCAATTAATATAATCTTTACTTAAGTACTCTTTTGCGAT
AATAAAATGAAAATGAAAGTCAAATGGTATATCATATGAAAGTAAACTTTTACCCGGTAA
TTAGTAAAAATAAAAATTTAATACAACAAACGAAGATACGACTCATATTAAAATTATAAA
AATGTCGAAACGAAACAGCACAGGGGCAGCCAATACTCTTTTCAACTATTTTACTAAAAC
ACCGCCAACGAATAAAAAATTAAAAGCGGACGCTACTGAAGATACTGATTGTAATGGTTC
CCCGAAAAGCAGTAAAAAAGGAATACATCTTGAAAACAAAAAACGCGAAAGGCAAATTAC
ACCCTCACCGGAGCTTAAGAAGGCTTCGAGTGATGAAGAAGAAGTTATTTCATTGCCAAC
AAAAAGAAAAAGAATAAGACTAAATCCAGTCGATTCTGATGATTCTGATGTTGAAAATAA
AGCAGACAATAAAATTGGAACAACTAAGAAGGAAGAAGATGAAGCAAAGAGTGAGAAAAA
GAAAGAAAGTATAGTAGAAAAGAAACTTCAAGACAGTTTTAAATATGAACCAAATCAAAC
CTCAAAAAGTAACAAGAATACTAAAACTACAGCTGGATCAAAATCAAAAACAATATTACC
TGAAGAAAACCCAAAGAGTCAGGAAGAAGAGTCATCAGATGGTAATTGGGTGCACTGCAA
GTTAGACTGGTTGAAGCCAGACAAGATCAGAGATGCGATGAAGAGGAAACTGGACCATCC
GGATTATAATCCGAGGACTCTGTATGTTCCACCGGATTTCTTAAAAAGTCAGACACCTGC
TCATCAACAATGGTGGATAATGAAATCAACCAATTTTGATTGTGTATTGTTCTTCAAAGT
TGGTAAATTCTATGAATTGTATCACATGGATGCTGCTGTTGGGGTCAATGAACTTGGATT
CTCCTACATGAAAGGTGATTTCGCACATTCTGGCTTCCCTGAAAGCGCCTACGGACGTAT
GGCTTCGACTCTAGTATCGAAAGGTTACAAAATAGCACGCGTGGAACAAACCGAAACTCC
TGAAATGACACAGGAAAGGTGTAGAAAAAGCGGACAGAGCAGTAAGCTGGACAAGGTGGT
CCGGCGCGAGGTGTGCCAGGTGGCGGTGCGCGGCGCCGAGGGCTGCGGGCCCAACGACGC
GCCGCGCGCCGCCGCACTCGCCGCCTACATGCTCGCGGTGGCTGAACAGGCACATAATGA
TTCAAGCACTTATGGGGTTTGTTTCATAGACACTTCAATAGGATTGTTCCACCTTGGACA
GTTCGAAGACGACAAGCACTCATCGAGACTTCTCACCACACTGGCACACTACCCACCAGC
CTTGATAATATACGACCGTAAAGCGACAACGGGCCGCACGAGCAAGCTGCTGTCCACGCA
CTGGCACGACGCGCGCAGGGAGCCCCGGACCCTGGGGGCTCCCGATGTCACGCTCAAAAC
CTTAGCCGAGAAGTACTACAGGACGAATGAGGACGGAGACTGGCCAGAAGGTATCAAGGA
GTTCTTACATCAAGGTGATTCCCTGGGTCTGACACCGGCTCCCAACTGTGAACTCGCCAT
TAAAGCTCTCGGAGGATGCGTTTCTTATTTGACCGAGTGTTTATTGGACATACAAATACT
AGGAATGTCGCAGTTCACATCGTACGCTCCACCCGATGTACTAAATAGGAAGTTATCGGA
AAGGCATAAGGTCGATAATCTTTGGGAGGGCGGCAACACCTTGGTGCTGGACGCAATAAC
GCTGAGGAATTTACGGATAGTACAAGACGAAGGCTGTCTGTACGATAGATTGAATTTTTG
TTCAACGGCTATGGGAAAAAGGTTGCTCTATCAATGGGTTTGTTCGCCGAGCGCTAATAT
AAACGTAATAAAAGAAAGGCAAGAAGCTGTCAAATGTTTGTTTGACAATCAGGAACTATG
TCAAAATGCAAAGAACGTTTTGACATCATTACCCGATTTAGAACGTCTGTTAGCTAAAGT
ACACACCCTCGGAAACTTGAAGCGTTCAAAGCAGCATCCGGATTCTAGAGCAATATTCTA
CGAAGAGAAGACATATTCAAAGCGGAAGGTTCTAGAGTTCATCTCCGTGTTGAACGGCTT
CACCTCAGCACTGACCCTTGCCGAGAGGTTCAGTGACGTAGACTCGGTGTTATTAAAAAG
AATCACACAAGTCGAAGGTGGTAATTACCCGGATTACAGGGACACTTTGAAATTTTTTAA
GGAAGCTTTCAATCAACAAGAGGCCGAGAAGGAAGGCTGCATCAAACCGGGCGCGGGCGT
CGACAGAGAGTACGACGGAGCCCTGCAACGAATACACGAGATAGAGAGTGAGCTCAAAGA
GTATTTAGCCGAGCAAGAGAAACACTTCCGCTGTAGATTGTCATATGTGGGTACGGACAA
AAAGCGTTACCAGATCGAAGTGCCGCAGAGCGCTTGTACCCGCGCCGGCTCGGACTACCA
CATGGAGAGCGCTCGCAAAGGGTTCAAAAGGTTTTCTACCAGCGAGACGAAGGAGTTCCT
GTCCCGCATGATGGCCGCCGAGGAACAAAAGACGAATGTGCTGAAGGACTTGAGCCGCAG
AATGTACGAGAAGTTCTCGTCCCACTATGCGCAGTGGGAAGCGGCCGTGCACTGCCTCGC
CAGCCTCGACGTGCTGCTGGCGTTCGCAGAGTTTGCACGACAACAGCACGGCGACATCTG
TCTACCCG
(2828 bp)

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