SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c28160_g1_i1
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		mRNA_transport_regulator_3_isoform_X2_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
Transcript
Level		FPKM:21.25 TPM:16.30
ORF EntryO_BomoASG13333_complete:A_BomoASG_c28160_g1_i1
Sequence
(Nucleotide)
TGTGGGAAAATGAAACAAAGCCACTGGACTTGACTTCTCGGGATCCTCCACAAAGTCACC
TGAAAAAATCTCAATGGAAAAACAAACTACTTATTTATTGAGGTTATGTTGTGACATTAT
AAATTAGTATCAAACAAGTAAATAATCATGCCGCTAGATTTTCGAAGATTTAATGGTCCA
GAAGATAGTGTATCATATAAAATATATACTAAAGACTACTTGAAAACATACGACGAACAA
TTAAAAGATCTGTATGATGAAAACGGGAAAAGAAAAGATGGACGTGAGCTAAATGAAGCT
CGCAGCATGTGTATGTTTTTTGCCAGAACTGACATGGTTTCACAAGCAAAGGGTTCAGCA
TATGTGGAGTTAAGGAAAACTAAAGTTGTATGCTCTGTATTTGATCCTAGGGAGATACCA
CATCAAAATGAATTCCGTCAGCTTGGCCAGTTATATTGTGAAGTGAAATTTGCACCGTTT
TCATGCCCGAGGAAACGTCGACCATATGTTCCTGATGTAGAAGAGAAAGCCTTGTCTGTT
GCTTTACGGCAGGCTCTTGAACCGGCTGTCTGTAGGCACTTCTTCCCAAACTATCAGATT
GATGTTTTAATATACATCTTAGAACATGACGGGTCATGTTTAGCAGCTGCTATCAATGCA
GCAGGACTTGCTCTAGCTAATGCCGCCGTTCCAATGTTTGATATAATCACATCATGCTCT
GTAGCAGTCATAGGCAACAAAATGTTCATTGACCCCACTGAAATAGAAGAACATATAGCA
AAGAACAGCACAGAAGTAAACCACGGAATTATAACAATGTCAGTGTTATCACAGTTAAAA
CAGATTTCAGATTTCACACAAATCGGTTCTATGGATGTTGAGTGTGTCACAAAAGTAATG
GAAGTTTTATTAAAAGAATGTGAAATAATAGTTCCGAATATACAAAGAGTTCTAGTTGTG
GATGTTGTAAAGAATTTTGAATTGAAAAAACACTTAGAAGCAGAAACAAAGAAACGGGAA
GAGATTTTGAAAAAGAAAATGGACGAATGGAGATCTTTATTAAATGGTCAATGAATACTA
ATTTGCATTTTA
(1092 bp)

- SilkBase 1999-2023 -