SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27416_g1_i1
Scaffold_idBomo_Chr19
NCBI non-redundant
(nr)		general_transcription_factor_IIH_subunit_4_isoform_X2_[Bombyx_mori]
Ontology
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
Transcript
Level		FPKM:3.86 TPM:2.96
ORF EntryO_BomoASG12119_5prime_partial:A_BomoASG_c27416_g1_i1
Sequence
(Nucleotide)
GAGTGGCGACTAGGGTCCGCCGCGCGCGGGGACCGGGCCCAACCTCTGCCGTGTGTCGCA
GCGCAAGGCGGGCCGCTTCTACCCCACCCGCCTCGCGCTCAACATCCTGCGCGTGCGCTG
CGCCGCGCCGCTCGAGGCCGCCGCCGGCGCGCGCGGACACCTCGTGCTGGAGACCAACTA
CCGCGTGTACGGCTACACCTCCTCCGACCTGCAGGTCGCGCTGCTCGGCCTCTTCACGGA
GCTCATCTACAGGTTCCCCAACGTGGTGGTGGGCGTGGTGAGCCGGGAGTCCGTCCGCCA
GGCGCTGCGCGGTGGCATCACGGCCGAGCAGATCATCCACTACCTGGAGCAGCACGCGCA
CCCGCAGATGCTGAAGTCAGAGACGGGCGGCATCCGGTCGGCGTCGATGCTGCCCCCCAC
CGTGGTGGACCAGATCCGCCTGTGGGAGTCCGAGAGGAACCGCTGCGTCTACACGGAGGG
GGTCGTCTACAACCAGTTCCTGTCGCAGGCCGACTTCGTGGTGCTGCGGGACCACGCCCG
CGCGGCCGGGGTGCTGAGCTGGCAGCACGAGCGCGCGCGGACCATGGTGGTGACCCGCGC
CGGACACGACGACGTCAAGAAGTTCTGGAAGCGCTACTCCAAGAACAGCTAGTGTCGCCA
CCGGGCCGCAGCACGCGCCTGTTGTCACTTTTAGCAAATAAAATAGTTTCGGAATAAAAC
GTACTTGAACATAACGAACTATTCTCCTGCCAACCCTTCAATTGTATTCTACATAAGTAT
AATTGGTACTAAAAAAATAAATTTATTTTTTGTTTGCCTGAACAACTTGAAACACTTTTA
TGTGAAAAAGACATGTCTGTTAAACAAACGTTTTTTATTTATTTTATTTTTATTGCCAGT
GTAGGCACATGAGTGCGTACAATCCACCTGATGGTGAGTGATTACCGTCGCCCCCATGAA
CTTCAACAATGCCAGGGGCAAAGCCAAGCC
(990 bp)

- SilkBase 1999-2023 -