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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27401_g1_i4
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:7.18 TPM:5.50
ORF EntryO_BomoASG12097_complete:A_BomoASG_c27401_g1_i4
Sequence
(Nucleotide)
GCTAAAGTTGTGTACAAGAGGTCCTTGCGTTTTATTAATTTGAACTACTACCATTACATA
CATTACAACAATTCATTTTGTGCCTTTCCAACTATAATAACATTTTGTTGCCGACAGTTT
ACGATTTATAAAGTCTAGTTCTTACTTAAAAAAAATTTAAAAAGCGACAGTATTTGGTAG
CTCAGTCATGGAGCCACCCAGTGCGGGGACCAGTTCTCCGGGTCTCTTAAACGCGCCTCC
TCTTTTACCGCCTCCAATGCTAAGCGGTATGCCTCCACCAATGCCGCCCGCTGTGGCAAT
GCCACCAGTGCCTGGGTTACCTCCAAATATGGCTACATTACCACCGCCCATGGGCTTTCC
TCCCATGTTGCCGCCTCCATTTTCAATACCACCGCCAGGATTCCCTGCATTCAAACCGGA
ATTAAATGCTCCTGCACCAGATGTTGCTCCATCGGCAAATCAAAGTAGTCCATGGTCTGA
ACATAAGGCCCCTGATGGAAGAACATATTACTATAATTCTGTAACCAAACAAAGCTTGTG
GGAAAAACCTGACGACTTAAAAACGTCAGCTGAGAAACTATTATCTGCTTGTGTATGGAA
AGAATATACCACAAATACTGGCAGACTTTACTATCATAATATTGAGACAAAGGAGTCCAG
TTGGGTAGTACCGAAAGAATTACAGGAGATTAAAGACAAAATTGCTGCTGAAGAAGCTGC
TCAGCGCATTGTGATGGAAGTAACACCGAGTGAGGTGCCGCTGCCGGCAGAGCCTGCAGG
CTCCTCCGCCCTTGACGAAGCTATGGCTAAAACATTAGCAGCCATTGATACCTCATTGGC
CACATCCATACCTGTACCTGACGAAAAACCAGAAGACACAGTTTCAATTAATAATGAAAC
TCAAGAACAACCTGAGATGTTGTACAAAGACAAGAAAGAAGCTATTGAAGCATTTAAAGA
ACTCCTGAAAGATAAGAATATACCCTCAAATGCAACATGGGAACAATGTGTAAAAGTTAT
TTCAAAAGATCCACGATATGTCACTTTTAAAAAACTCAATGAAAAGAAACAAGCGTTCAA
TGCTTACAAAACTCAAAAACTAAAAGATGAAAGAGAGGAACAGAGACTGAAAACAAAAAA
AAATCGCGAGAATCTTGAAGAGTTTTTGTTGAGTTGCGAACGGGTGACATCTCTAACAAA
ATTTTACAAATGTGAAGAAATGTTCAGCAATCTAGAGATTTGGCGATGTGTTCCAGAAGC
CGATCGTAGGGACATATTTGAAGATTGTATTTTTACTATAGCGAAACGGGAAAAAGAAGA
AGCAAAGGCTTTAAAGAAACGGAACATGAAAATGTTAACCCAGGTATTAGAGAACATGAG
CGAAATTACGTACAGTAGTACGTGGAGTGAGGCACAAGTACTATTGCTAGAAAATTCAGC
TTTTAAAAATGATGTTAGTTTACTAGGTATGGACAAGGAAGATGCCCTGATTGTATTTGA
ACAACACATACGAAATTTAGAAGCTGAATATCAACAAGAAAGAGAACAAATTAAAAAGAG
GAATAAAAGACAACAAAGAAAAAATAGAGACAACTTTTTGGCTTTGCTGGACAGTCTTCA
TGAAGAAGGTAAATTGACATCGATGTCTCTATGGGTCGAGCTGTATCCGGTTATTTCTGC
AGACATGAGATTTTCAGCTATGTTAGGACAAAGCGGATCGACACCGTTAGACTTATTCAA
GTTTTACGTTGAAAATTTGAAAGCGAGGTTCCACGACGAAAAGAAGATAATAAAGGAGAT
ACTGAAAGACAAGAATTTCGAAGTTAAACCGGAGACCACGTTCGAGGAGTTCGCCACCGT
CGTGTGCGAGGACAGCAAGTCCGCCTCGCTCGACGCCGGAAATGTCAAACTTACTTACAA
TTCGCTTTTAGAGAAGGCTGAAACTAGAAAGAAGGAGAAATTGAAAGAAGAATCGAAAGC
TCAAAAGAAAATAGAATCTGCATTTAAATGGGCATTGAGTGATGCAAACATCGACCACCT
GCTCTCGTGGAGCGAGGTTAAGGAGAAACTTGACTTGAACGCGCCAGAGTTTGCCGCCGT
CACCAGTGAAGAAGACAGAATTAGAATTTATAAGGATTATCAGCATGAACAAGAAGAAAG
CTGCATGCACTATCACCATCCAAAACCAAAGAAGTCCAAACGATCAAAGAAGAAGAAGCG
TTCTCACTCTGCCTCTTTGTCTCGGTCAGCATCAGCGTCGCGGTCGCCATCCCCGGCACC
GAGCCACGGCACTTGGAGCTCCGACGAGGGCCGGAAACCCAAGAAAACTAAGAAGAAGCA
TCGGAGGCACTCTCCTGCTCCGAAATCACCGTCTCCCGAGGAGGGTGGCATCACAGACGA
CGAAGAAGTGATTCGGCACAAAAACAAAAAGACGAAACGCAGTGCGCCCAGCAGCCCGGA
AGAGGAACAGGAACCGGAAATCGTTTACAAACCCAAGAAGAAGAAGGACAAGAAAGATAA
AAAAGAGAGGTACCCACGTAGATGATTAAGGTTTCTGTTGCCGCGTAACACGACGAACTC
GACGACACATAAGGTCGTCCCCGATATATCATAACAGTTCTTTAATAAAAACTAAGTAAA
TAACACACTTACACTCAACAATCCATTAATAATAAGTTAAACAAGAGGAAAGGGTACCGC
TCTTGCAGTCGAAGCAGTATATGTATATATTACCTGAGCACAATGAGAAAATAATATCTA
ATAGCATCAAGCTTGAGTATGAACTCAACGGAGGAGAAGAGAGCTCCTGATTGTCCACTT
CATGAACTCGCTAGGCCGACCTCGCCAGGAGATCTACTTAATCCATCATGCTCCAGGGCT
CTCGCAATGCTTCCAGACAAAAGTAGCGGATCATCGCAATGCAGTCAGTGAAACATCAAA
GGGAGAAAGAGAATTCACCATCAATGCAACAGTTTCCGTTCTGAAAAGAGTGAACGACTT
TGAAAAATCCAGGCTTCGTCTCAATAATTTCAAAGTGTGAGCCCGCAATGTAAACATCCG
CTATTAAGATCAACAAGAAACTAATTGTTTGTCAAAATGTGTATAATATAACTGACCCTT
ACTTAATTTATCTCGCATGACTACTATTTGTGTAACATGAGTTTGATTTTATTTCTGTAT
CGCAGCAGTCGAAAATGCGGAAGTTCACCGCCAAATTTTGTACCTTTTACATTGCGGGTT
CACGAAAAACGTAATGATTAGTTAGAAATATCTTGCAGCGGTAATCACTTATCCTCCGGT
GCGTTGTACTACCACCTAT
(3319 bp)

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