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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27401_g1_i2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		pre-mRNA-processing_factor_40_homolog_A_isoform_X1_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:11.98 TPM:9.19
ORF EntryO_BomoASG12094_complete:A_BomoASG_c27401_g1_i2
Sequence
(Nucleotide)
GCTAAAGTTGTGTACAAGAGGTCCTTGCGTTTTATTAATTTGAACTACTACCATTACATA
CATTACAACAATTCATTTTGTGCCTTTCCAACTATAATAACATTTTGTTGCCGACAGTTT
ACGATTTATAAAGTCTAGTTCTTACTTAAAAAAAATTTAAAAAGCGACAGTATTTGGTAG
CTCAGTCATGGAGCCACCCAGTGCGGGGACCAGTTCTCCGGGTCTCTTAAACGCGCCTCC
TCTTTTACCGCCTCCAATGCTAAGCGGTATGCCTCCACCAATGCCGCCCGCTGTGGCAAT
GCCACCAGTGCCTGGGTTACCTCCAAATATGGCTACATTACCACCGCCCATGGGCTTTCC
TCCCATGTTGCCGCCTCCATTTTCAATACCACCGCCAGGATTCCCTGCATTCAAACCGGA
ATTAAATGCTCCTGCACCAGATGTTGCTCCATCGGCAAATCAAAGTAGTCCATGGTCTGA
ACATAAGGCCCCTGATGGAAGAACATATTACTATAATTCTGTAACCAAACAAAGCTTGTG
GGAAAAACCTGACGACTTAAAAACGTCAGCTGAGAAACTATTATCTGCTTGTGTATGGAA
AGAATATACCACAAATACTGGCAGACTTTACTATCATAATATTGAGACAAAGGAGTCCAG
TTGGGTAGTACCGAAAGAATTACAGGAGATTAAAGACAAAATTGCTGCTGAAGAAGCTGC
TCAGCGCATTGTGATGGAAGTAACACCGAGTGAGGTGCCGCTGCCGGCAGAGCCTGCAGG
CTCCTCCGCCCTTGACGAAGCTATGGCTAAAACATTAGCAGCCATTGATACCTCATTGGC
CACATCCATACCTGTACCTGACGAAATAGAACCAGAAGACACAGTTTCAATTAATAATGA
AACTCAAGAACAACCTGAGATGTTGTACAAAGACAAGAAAGAAGCTATTGAAGCATTTAA
AGAACTCCTGAAAGATAAGAATATACCCTCAAATGCAACATGGGAACAATGTGTAAAAGT
TATTTCAAAAGATCCACGATATGTCACTTTTAAAAAACTCAATGAAAAGAAACAAGCGTT
CAATGCTTACAAAACTCAAAAACTAAAAGATGAAAGAGAGGAACAGAGACTGAAAACAAA
AAAAAATCGCGAGAATCTTGAAGAGTTTTTGTTGAGTTGCGAACGGGTGACATCTCTAAC
AAAATTTTACAAATGTGAAGAAATGTTCAGCAATCTAGAGATTTGGCGATGTGTTCCAGA
AGCCGATCGTAGGGACATATTTGAAGATTGTATTTTTACTATAGCGAAACGGGAAAAAGA
AGAAGCAAAGGCTTTAAAGAAACGGAACATGAAAATGTTAACCCAGGTATTAGAGAACAT
GAGCGAAATTACGTACAGTAGTACGTGGAGTGAGGCACAAGTACTATTGCTAGAAAATTC
AGCTTTTAAAAATGATGTTAGTTTACTAGGTATGGACAAGGAAGATGCCCTGATTGTATT
TGAACAACACATACGAAATTTAGAAGCTGAATATCAACAAGAAAGAGAACAAATTAAAAA
GAGGAATAAAAGACAACAAAGAAAAAATAGAGACAACTTTTTGGCTTTGCTGGACAGTCT
TCATGAAGAAGGTAAATTGACATCGATGTCTCTATGGGTCGAGCTGTATCCGGTTATTTC
TGCAGACATGAGATTTTCAGCTATGTTAGGACAAAGCGGATCGACACCGTTAGACTTATT
CAAGTTTTACGTTGAAAATTTGAAAGCGAGGTTCCACGACGAAAAGAAGATAATAAAGGA
GATACTGAAAGACAAGAATTTCGAAGTTAAACCGGAGACCACGTTCGAGGAGTTCGCCAC
CGTCGTGTGCGAGGACAGCAAGTCCGCCTCGCTCGACGCCGGAAATGTCAAACTTACTTA
CAATTCGCTTTTAGAGAAGGCTGAAACTAGAAAGAAGGAGAAATTGAAAGAAGAATCGAA
AGCTCAAAAGAAAATAGAATCTGCATTTAAATGGGCATTGAGTGATGCAAACATCGACCA
CCTGCTCTCGTGGAGCGAGGTTAAGGAGAAACTTGACTTGAACGCGCCAGAGTTTGCCGC
CGTCACCAGTGAAGAAGACAGAATTAGAATTTATAAGGATTATCAGCATGAACAAGAAGA
AAGCTGCATGCACTATCACCATCCAAAACCAAAGAAGTCCAAACGATCAAAGAAGAAGAA
GCGTTCTCACTCTGCCTCTTTGTCTCGGTCAGCATCAGCGTCGCGGTCGCCATCCCCGGC
ACCGAGCCACGGCACTTGGAGCTCCGACGAGGGCCGGAAACCCAAGAAAACTAAGAAGAA
GCATCGGAGGCACTCTCCTGCTCCGAAATCACCGTCTCCCGAGGAGGGTGGCATCACAGA
CGACGAAGAAGTGATTCGGCACAAAAACAAAAAGACGAAACGCAGTGCGCCCAGCAGCCC
GGAAGAGGAACAGGAACCGGAAATCGTTTACAAACCCAAGAAGAAGAAGGACAAGAAAGA
TAAAAAAGAGAGGTCGGGTGCGGCGTGGAGTGACGCCGACCTGGAGTCGCGTCGTGCGGC
GCTGCTAGCTCAGCTGCACGAGCACGAGGCGGACTGACGTCGCGTCACACACGTGCACAT
CTTCAACCAGTACCCCGCACAGTCGCGAGCGCAACCCTCCTCCTCGTCAACAACCACACA
AAACAAGGGCCAAGTGAAAAAAGGGCTTGAGGAACAAAAACAACACTAAAATAATATTTC
CTCGCTCATACTGTCACAGCGCGTTGCTTTATTTTCCTGTAAGGCTAAACTTGAATAAAA
AAAAACCATTAAAAGTTCTATTTATTGTTTAACAAGAATAAAATTAAAGATGGCGGTATA
AAAGAAACGACATGAAATAAAACGGTATTCGTATATGAAATATGTCTCTATCACTTACTA
TTCGATTGGAAATCCAAAGACAATCCTTTTTCCACTTGCCTCGGGCTCGCGGAAAGCTTC
GCGTTCGTAAATCTGCCATTCGTGTGTAATCTCTGCGGTCGTACTGTTTAGCACGATATG
AATCAATAAAGTTTTCCTATAGATTAGCCAGTGACAAGACGAGTCGCGTGTCTTACGTTT
ATAATGTTTATAATGCCTAACAGCTTAGGAGAGTACTTATATAAATTTTATTGTAAAACA
TATATCATTATTATTTATATAAAAAAATTCTAACCTTTTGTGTTTACCTGCCTGAGATCG
GAA
(3243 bp)

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