SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27320_g1_i3
Scaffold_idBomo_Chr2
NCBI non-redundant
(nr)		talin-1_[Bombyx_mori]
Ontology
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
Transcript
Level		FPKM:11.27 TPM:8.64
ORF EntryO_BomoASG11922_5prime_partial:A_BomoASG_c27320_g1_i3
Sequence
(Nucleotide)
GCGGGCGGGGCTGGCGGCGGCGCAGGCCTACCGCGCGCTGCTGCAGGCCGTGCTGCAGGC
CGCCACCGGGGACTCCGCCGCGCGCCAGCAGTTCCCGGAGCTGTCCCGCCGCGTGGCGCA
CACCGTCGCCGACATCATCGCCACCGCAGAACTGCTCAAAGGTTCGGACTGGGTGGACCC
CGACGACCCCACGGTGATAGCCGAGAACGAGCTGCTGGGGGCCGCCGCCTCCATAGACGC
GGCCGCCAAGAAGCTGGACTCGCTCCGGCCCAGGAAACCAGTGAAGCAGGAAGCCGATGA
GACTCTGAACTTCGACGAAATGATCTTGGAAGCTGCCAAGTCCATTATAGCTGCGACGTC
GGCCCTCGTCAGGGCTGCCTCCGCGGCGCAGCGGGAACTCATCGACCAGGGTGCCGTGGC
GCGCCGGCCCGCCATGTCGTCGGACGACGGGTCGTGGTCGGGCGGGCTGGTGAGCGCGGC
GCGGCTGGTGGCGGCGGCCACGCACTCGCTGGTGGAGGCGGCCAACGCGCTGGTGCAGGG
CGCCGCCACCGAGGAGCGCCTCATCTCCAGCGCCAGGCAGGTCGCCTCCTCCACCGCGCA
CCTCCTCGTCGCCTGCAAGGTGAAGGCGGACCCCGGGGCGGAGAGCACGCGGCGGCTGCA
GGCGGCGGGCGCGGAGGTCATCCGCTCCACGGACAACCTGGTGCGCGCCGCCCGGGACGC
CATCCACTGCGACGACGAGCGCAGCCTCGTGCTCAACCGCCGCATGGTGGGCGGCATCGC
GCAGGAGATCGACGCCAGGTCGGAAGTGCTCCGCATCGAGAAGGAACTGGAGGAGGCCCG
CGGCAGGCTGACGGCCATCAGGCAGGCCAAGTACAAGCTGAGGAGCGACGCTGACGACTC
CGACGCTGACCCGCAGCCCGGCTACGGCAGCGACTCCTCGGGACCCCAGCGGGTGCGGAC
TCCTAACAGCAGCTTCGCGAACACCACGTACAGCCCCAACAGCTCGCAGCAGACCACGCT
GCACCAGAGCTCGCTGCTGCAGACCACGCACAGCTCCGGACTCAACTCCACTTCCTACGG
ACAGCAGAACAGCAGCAGCCCCGCCCCCCCGCAGCCCACCAGCCCGACGTTCTCCAGCTT
CCGTCCGGCGCCGGACGCGCCCAAGCAGAACTACGAAGCCTTCACGACACGCGCGAGCGC
CTCCGACGAGACGGTGGTCGTGAAAAGCCTTCGTCTGCCGGAAGTGCGTAGCGCGTTGCT
TGTCGGTGCTGACCCCGGGCCACACACGGTCCGTTACAAGCGGGAGACGCCCCCGCCGCC
GCCCCCCAGGAGGATAACGCTAAAGTACGAGGACAACGCTACTTAATTTGGCTACGAAAC
TCGAATGTACGACACGCCGCGACCGGTAGCCGAGCACTCCACCACCGAGCGACAGGAGAC
CAGCCAGTACAGATACAAGCAGGAGAAGTTGGACTACGAAGCGCCCAGGACGCCCCTGAG
CCCTAAGTTCAACGCCAGAGAGCTTAAATTCGACGAGCACCCCGAGCCGATATACTCCAC
CCTGAAGAAACCCTCCGACGGTTTGGGACAGACGTTCTCGGAGCACCAGAGGTCCACGGA
GTCCATCCCCGGAGGCACCAAGCATTCAGAATACACAATCAAAAGTGAATCTTACCAGTC
GTTCCCGAAGACGGAGTTTTCCAAAACGGAATTTAAGCAGGAAGTGAAATCTCCATTCAC
ATCCACTCCGAAGTTTGATCGCACAAGCTACGTGACCACCTCCAGTGACCTGGTGAAGGC
CGCCACGCCGGACTACGAGCGCATGGCTTCGCCCTACGCCAAGGAGGGCGACAGCTACGG
AGGTCCCAATTACATGGAGGAAACCACCACGGAGGTCAAAGAAATACCCAACGGCACCCA
GAAGATCACTACAACGAAGATATACAGCTCGTCGCCCGTCAACCTGACCTCCACCAGCAC
CAAGTACGAGCCGATCAAACTGGACGGAATCGACGAAATCTCGAAGACCTTCGACAGCGA
CTCCCGGTACAGCACCCTGGACTCGAGGTTCAACACGCTAGAGTCCAAGCTCAGTTCGGA
CACGAGCCGCTCCTTCATGAGGCCGTCGGAGTTCCAGTCGTCAGACTACCAGACCACCAG
CAACGTGACGAAGATCAAGAAGCCGGATCTGTCGAAGGAGATCGACAGCCTGGACAAGAG
GATCTCAAAGCAAACGATCACCTCGGAGACTATCGAAAGGAAGTCCGTAATGACCAGCTC
TCACAAATCGGAGACCAGCTCCACCGTCACCAAGAAATTCGGGAACTTCTAGAAGGTAAA
TGACGCAACTTGTCGTGGCGTGCTTCGTGCGTTGACAGCTGTCACCCGTGACACCTGTCA
AGGACTGTGCTTATTGTCAATGATCCGTGCTTAGTCGTTAAGAATCGAGTGTAGATCTTA
TTTTTAAGGTTTTCATTGTGTTCTACTGAACTTAGTAGAAACATTAGGTTTTTTTTTTCT
ACTAAATTGGTAGAAAATCGTAAGGTGCTAAACGTTATCGTGAACTAGGTGTCTAAACTA
ATGCCTTAACTGTAATTTATTGAATGTTTTTGATGTCATTTTTATTATAAAAAAAAAACT
TATCTTTATTTCTTAAAAACTATGAGTAATGTGTCATAATGATTCAACCAACTTGTAAGA
AATAACGCACGAATTGTTCATATTTTGTACACTTTTTAATTAATAGATAAAAGTTCTTAT
ATAAAAGTTTCATTCCTAAAAGTGGCTCCAAAGCTGAGGCCTTAATACAACAATACTGTG
TCGAGCTTACTTCACTCATAGTTTTTATTGAATAATCTAATAACGTAATATGTAAATACG
AACAGATCTAAGGTTTTATCTAAAGTTGATTTTGGGTAAACAAATAATTGGCCCGTTTCA
AGCGTGCGTCAGCGCTGTTGTCCCTGGGCAGCACGGCCCAGTGTCTCGCGGACGACGGTT
GATAACAGTGCGGCTCAATAGGGCTCTATAAATGGGAACTTATGAAATTCAAAAGGCATT
GTTACAGATCGCCATACAAAAATAAATTGAGCCATAGTCTTAAATCTGTTTCGTACATTA
AGCTATTCACAAAGTGGCCCCGGGCGCCCCGGACTGCGCCCCCGCCGCGCTCCTCACTCA
TTGATAATGGCGAGCTATTTTTGTGTTTTTTTAATGTACAATTTTTTTTTGTTATTTTAA
AATTTATATTATTAATTAAGAAAATGTTTTAATATTTTGACAACAGATGGCAGTTTTATA
ATTTTTTATTATATTATCTTATTTGCTTAGTGATGTTTAGTGTAGTGTTGCGTGTGGAAT
GTGGTCCGCGGGCGCCGACATCCGCAGAGCTTATTGTTAACGTTCCAAGGAAATATTGTG
TGTGCCATGTTGACTATTCAAATTTATTGACTAATATATATCTATTTTTATAAAAAGCTG
TTGTTATTGTCTGTGGTTCCGCGAGTTGTTGTTTTAGTGAGGTTTTTGGTTGACCTCACC
AGGACACGGCAGGACTAGGTCGGTGTAGAGCTTGTCGGAGTGGAGGGGCGGAGGCCCACA
CTGCTCTAGGGTCCCTCACATGTTAACACCCCACTGAGTTATGTGTTGAATAACAAGTCA
AATATTTACATGTGGTGTATCTGTCGGTGCAAATAATTAAGCAGTATATACACAGACTAA
CTTTGAGTGCAACTAATATATTGATGTTTTAAAGTTACTACTAAAATAAAGGCTTAAAAA
CTATATATATGTTTCTTTATATTTGTATTTATGGGTGTTGTGTTGTTGTCCAGACGACGA
CAGAGAGATCGCTTAGTGTCGCGCGTCCGGTTTAAATGTTACAAGAAAACAATTCCCACC
GATTTTGTTCAAAAATAAAAGTTTAAAAATTTCATTTCTTAAGTTTAGTATAAAAAAAAA
ATTTTGTTTTAATGTTTCCCCCAGCGACATGACTCGAGGTGCCGACGCGACCCCCACTGA
TATTAGTTCAAATCATTCTTGTATCTCAGCATTGATTCGAGAGTCTTATGATGAAATGTG
CCTTACGTGCAGCTCATGTGGCGCCGGACGCGCGGCCGACTGTATATGAAAACTTATTGC
GACTGTGGTAGCTCTATCTCCGTATAAATATATATAAAGAAGTTATTTTGTACCGCCTTT
TATGCGCGTTTTGCCGATGCGCTAAATGGCAGCTGTTAGCGCGGGGTTGAGGAAAAGGAA
GACTTTGTTTCCGACTCGACTGGCAATTAACTTAAAATAATAAATTCTCTATTAATTACT
GTTCAATCAGAACCTATATTGACCCGGACTAATTTGTTTGGAATAAGTTGCAAAACATTC
GTCTCGTTCGCACACATAGCACGGTAACGCTCGTGTGAGCGAGACGAATATACTCTATTT
TGCTTCAGAGATGTTCTATGAATTCTTATATGAATTAAAAATTCTGTAAATAATTTGTTT
TTAGTATTTTACGGTAGATGGCGGTGTTCTCTGATCCTCACAGTGCTTCTATGGTCACTG
CTGTCCACGACGCGACGAACACTACAAACAATATCTGCTCATCTCCTAACAAAAAATAAT
GTAATCGAATTGTTTAAATATAAAAAATAATCGTTCCCAAAGAGATCGGAAGAGCGTCGT
(4680 bp)

- SilkBase 1999-2023 -