SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27143_g1_i4
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		probable_ATP-dependent_RNA_helicase_DDX23_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:18.69 TPM:14.34
ORF EntryO_BomoASG11693_complete:A_BomoASG_c27143_g1_i4
Sequence
(Nucleotide)
GTGACATTGAAGTTGTTCACATACTGCTACATTTTGTACATGAAAAATACACCGAATTTA
ATTTTATTGTATTTGCTGTATAATACCTATAAAGAAATTAACAAAATAAAAACCGGTGGT
TCCATAAACCAAAAATGGCCCGAGACAGAAGTCCTGAACGGCGGAGGTCAAGATCACGAG
ATAGAAGAGATCGGGATCGTTACGATGAACGCGAATCGTATCGTGAAAAAGTAAAGCGCA
GGGACAGGTCTAAAAGCCCTAAAAAAGATGCGGATAAAGCTCGAAGCCCTTCTAGAAAAG
ATCGCGATCGTTCTAGGAGTCCACTACGTAAAGAACGCGGTCGTTCGCGCAGCCCTAAGA
AACGTGACGGCAAAGACAAAGATCGACGTTACGAAGACAAGGAAAAGAGTAGATCAAAAA
AAGAAGATGAAATGGAGGAAGACACTGCAGACATGAAGAAAGAGGATGAATCCATAGATA
AAAAACCAATTAAAAAAGAGCCTTTGTCCTTAGAAGAACTACTTGCTAAGAAAAAGGCTG
AGGAAGAAGCCCGCAGTAAGCCAGTATTTCTTACCAAAGAGCAACGAGCACAGATAGCTT
TGGAGAAACGGCGTCAAGAAGTAGAAGCTATAAGAGCTAATACTGATAAGCCTCAAGTCA
CTATTGATTTAACAGGTCCGTCAAGACGGGAAGAAGATAAAAGGCACAGAGAAGAACGTG
AAAAAGATAGAGAAAAGGAACGTCGAGAGGAACGGGAAAGGAAATATGAAGAGAGGAAAG
CCTATTCAGATCGTCGAGAACCAAAAAAAGATAATGAAGAGACATCTAAAACAAAAGATA
AAGAAAGAGAAGAAGAGGCTATTAAAGCTCGTTACTTAGGTATAGTAAAGAAAAAGCGTA
GAGTAAGACGGCTGAATGACAGGAAATTTGTTTTTGACTGGGATGCGTCAGAAGATACAT
CAAATGATTATAATGTTTTGTACAAAGAAAGACATCAAGTACAATTCTTTGGTCGTGGAC
ACATTGCTGGTATAGATATCAAGTCTCAAAAGAAAGACCATAGCAAATTCTATGGGAATC
TTTTAGAAAAGCGCAGAACTGAGTTAGAGAAAGAACAAGAAAAACTACGCTTGAAGAAAG
TGAAGAAGAAGGAAGACAAGCAAAAGTGGGATGATAGACACTGGTCTGAGAAAGATGTGG
ATGAGATGACAGAGCGTGATTGGAGGATATTCAGGGAAGACTACAATATTACCTTAAAAG
GAGGTAAAATTCCTAACCCTATACGTTCTTGGAAGGAAGCTCCCTTGCATACTGACATTA
TGGACATAATCAACAAAGTTGGATATAAGAGCCCAACTCCTATTCAAAGGCAGGCTATTC
CAATTGGATTACAGAACCGTGACATTATTGGTGTTGCTGAAACTGGTTCCGGTAAAACAT
TGGCATTCCTTATACCATTACTTACATGGATTCAATCTCTGCCAAAGAGTGAACGTATGG
AAGATGCTGACCAAGGACCTTATGCTATAATTTTAGCTCCAACACGTGAATTGGCTCAAC
AAATCGAAGAAGAAACTAATAAATTTGGTATTCCTCTTGGTATCACATCAGTAGTGGTTG
TTGGAGGTTTATCTCGTGAAGAACAAGGTTTTAAGCTGAGGTTAGGCTGTGAGATTGTCA
TTGCCACTCCCGGTCGTCTTATTGATGTCTTAGACAACAGATATTTAGTACTAAACCGTT
GTACCTATGTTGTTCTTGATGAAGCTGATCGGATGATTGATATGGGTTTTGAACCGGATG
TTCAAAAAATCCTGGAATACATGCCTGTATCGAACATAAAACCTGATAGTGATGCAGCTG
AAGATGCTTCAGTATTGCTTGCCAATTATAACACAAAAAAGAAATACCGACAAACTGTGA
TGTTTACGGCAACAATGCCTCCGGCTGTAGAGCGGCTGGCTAGAAGTTATCTCAGAAGAC
CGGCTATTGTATATATTGGATCTGTAGGAAAACCAGTAGACAGAACTGAACAAATAGTCT
ACATGATAGGCGAGAATGAAAAACGTAGAAAACTTACAGAGATTTTGCAGCGTGGTGTCG
AACCACCCATTATTATTTTTGTTAACCAGAAAAAAGGTGCAGATGTTCTTGCAAAGGGAC
TTGAAAAACTTGGTTTCAATGCCTGTACGCTGCATGGTGGTAAAGGCCAAGAACAACGTG
ACTTTGCACTTGCCAGTCTCAAAGGGGGCGCTAAAGATATCCTCGTGGCGACAGACGTGG
CAGGTCGTGGTATTGACATTAAAGATGTCAGTATGGTCATTAATTACGATATGGCGAAGA
CTATTGAAGACTACACTCATCGTATCGGCCGTACCGGTCGTGCAGGAAAAACTGGTAAAG
CTATGTCCTTTGTTACAAAAGAAGACTCCGCATTGTTCTATGATCTGAAGCAGGTTTTGT
TGGCAAGTTCCGTATCTACGTGTCCACCGGAACTTATGAACCACCCTGAGGCTCAACATA
AGCCAGGGACAGTCGTAACAAAGAAGAGACGTGAAGAGATGATATTCGCTTGACAATCCT
AGTTATAGTCTAAAATAATAAGCAATAGGTAAATTACCATCATGGTCACCAGCAAGTTAT
AAAGTCTATAGTTACTTTAGTTCTAA
(2666 bp)

- SilkBase 1999-2023 -