SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c27020_g1_i3
Scaffold_idBomo_Chr14
NCBI non-redundant
(nr)		pre-mRNA_cleavage_complex_2_protein_Pcf11_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000993 F RNA polymerase II complex binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005849 C mRNA cleavage factor complex
GO:0006369 P termination of RNA polymerase II transcription
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
Transcript
Level		FPKM:9.22 TPM:7.07
ORF EntryO_BomoASG11472_5prime_partial:A_BomoASG_c27020_g1_i3
Sequence
(Nucleotide)
CTACTGTCCAGTGTCCACCATTTCGTGTTCGACTATCTGAGTGGCAACGTTTACTCTCGA
TAACTGAAAAAGTCTGCAGCGCGTTAAACAAAATTACGCGTCAGATTGGTGTGTTATTTG
TATATTGCGTATCTAAGAACGTGCCGTGGCTAACATTACAGTGCTTTATCGTTGAACAGT
TCGTGTTATATTTAACAACTGATGTGCAGTTGATGCTAAAAGTTCGTGTTTGGCATGCCA
TCGTGGGCGGCCGTGCATCATGTCGAAAGAAATCTCCGAGGAATATGCGTCCAGTTTGGC
GGATCTGACCGTCAACAGCAAGCCATTGATAAATATGCTCACAATTCTTGCGGAAGAGAA
TATCGAACACGCTGGGGTTATCGTTGAAACCGTGGAAAAGCATTTGGAGAAGGTGCATCC
CGATATCAAGTTGCCAGTTCTGTATTTAGTTGATTCAATTATCAAGAATGTTGGCGGAGC
CTACACACAAAAATTCTCACAGAGTATCGTCAACATGTTTACAAGGACTTTTAAGCAGGT
TGATGAGAAAATACGGTCACAAATGTTCAAACTTCGTGAGACTTGGCACGATGTGTTCCC
AGCGACGAAGCTGTACCAGCTAGATGTCAAAGTCAACCTCATTGATCCAGCATGGCCGAT
ACAGGCCCAACCCCAGCAATCAAACATCCATGTAAATCCAAATTTTCTGAAAAAGCCACC
GGCTTCCACACCGGTGTTGACTGACGAAGAACGAACCATCATCGCTAAGAAAGAGCAGGA
GCTGCTCATGCTACAAAAGAAAAAGATTGAGTTGGAATTGGAGCAGACACGGAAGCAGCT
TGAGGTAGCTGAGAAGAATGCTAAAAAGGTGGTGACAGCAGTCCCTCCCGTGGTGGCCGC
AGCGACTGCGCCCGTCGCCCCCGCCGCGACTCCGCTGGTCTCCGTCGCTGCGCCAGAGGT
CACCCCTGTACCTGTCAGACAGAGGCTCGGACCGCCAATAAACAAAACGGGCAGTCGGAT
AGCGCCCGTGAGCGCGGGG
(1039 bp)

- SilkBase 1999-2023 -