SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c10001_g1_i1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		uncharacterized_protein_LOC101735977_isoform_X2_[Bombyx_mori]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:4.48 TPM:3.43
ORF EntryO_BomoASG1612_3prime_partial:A_BomoASG_c10001_g1_i1
Sequence
(Nucleotide)
TAATTGAGAAATGTTATAAAATTATTGTAGGTAAAATGTATTTCTCTTCTGTGACTACCT
ATCTGAAACTGAAAAGTGAAATAATTGAATTATTGAGGGTATGTTAAATTTTCCTAATTT
TAAGACAAGCACATTTCTCTAACATTGGAAAACAATGCCTGATCCAAAACTCCTATCAGG
AGAAGAGTTAGTAGCAAAGGGTGTAACGAGAACTGAGGGTGCACTGCCCATCATTGGCCT
CAAAGAAGTTGTACCAAACGGTTCTTGGTTAGAGCAAAAACAAATACAAGTGGCTTTGGA
AGCTAGAAAACATTTAATCGAAGTTAATAGGATAGAAAAACAAGGTAGTTTATCACATGC
TGAATGGAGAAACGATTTAAGGCTTGCTGAAGTAATTCGACAAACTGGTGGATACTGGCA
GTTCTATGGACATCATCAAGGAAAAAAATTGTACCTAAAACCTGAAGAAG
(470 bp)

- SilkBase 1999-2023 -