SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c4826_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:2.00 TPM:0.89
ORF EntryO_BomaMSG1150_5prime_partial:A_BomaMSG_c4826_g1_i1
Sequence
(Nucleotide)
CTCATCGTGGCCGCGGACATGGGCTGCAGCGCCGAGGTGCTCATCATCGTGTCGATGCTG
TCGGTGCCTTCAGTCTTCTACCGTCCTCAAGGTCGCGAGGAAGAAGCCGACGCAGTCAAA
GAGAAATTCCAAGTTCCCGAATCCGATCACCTGACCCTCCTACACTTGTACAACCAGTGG
AAATCCGACAACTACTCCAGTCAGTGGTGCACGGAGCACTTCGTTCACGCGAAGGCGATG
AGGAAGGTGCGCGAGGTCCGCCAGCAGCTGAAGGACATTCTGCAGCAGCAGCGCCTGCCG
CTCGTGTCCTGCGGCACCGATTGGGACACCGTCAGGAAATGCATCTGTTCAGCTTACTTC
CAGCAGGCGGCGCGGCTGAAGGGCATCGGCGAGTACGTGAACTGCCGCACCGGCATGCCG
TGCCACCTGCACCCCACCTCGGCGCTGTTCGGGCTGGGCTGCAGCCCCGACTACGTGGTG
TACCACGAGCTCACCATGACGGCGCGCGAGTACATGCACTGCGTCACCGCCGTGGACGCG
CGCTGGCTGGCCGAGCTGGGGCCCATGTTCTTCTCCGTCAAGGAGACCGGCAAATCGAAT
CGAGACAAGCGTAAAGAGGCAGCGGTCCACCTCCAACGCATGGAAGAAGAGATGAAGGAG
GCCGAGGCCAAAATGGCAGAAGATCGGA
(688 bp)

- SilkBase 1999-2023 -