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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c23158_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		splicing_factor_3A_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.96 TPM:3.11
ORF EntryO_BomaMSG13779_5prime_partial:A_BomaMSG_c23158_g2_i1
Sequence
(Nucleotide)
CCCACCTCCAGATTTCGAATTTATCGCTGATCCACCGTCTATATCGGCTCTGGAGCTCGA
CATAGTGAAATTAACCGCGCAATTTGTCGCCAGAAACGGTCGTCAGTTTTTAACAGATTT
AATGAAGAAAGAGGAGCGTAATCATCAGTTTGATTTTCTTCGTCCCCAGCATTCACTGTT
CCAATACTTCACGCGTCTGCTTGAGCAGTACACGAAGGTGTTGCTGCCGCCAAAAGAACT
AGTATCAAAGCTGAATGCTGAGATACGCAGCGGGATATTAGAACAAGCTCGCAGTCGCGC
GGCCTGGCACGCGCACCAGGCCAAGCGTAAGGCCGCTGACGAGGCCAAAATTGAGAAAGA
GAGGCTCGCGTATGCCTCCATAGACTGGCACGATTTTGTCGTTGTTGAAACTGTAGATTA
CCCCGCAGGGGAACCCGGAGACTTCCCTCCTCCGACCACTCCACTAGAAGTCGGAGCCCG
CGTCCTCGCCCAAGAGAGGGGTGAAGATATAATACGGAACCAGAATGACGACGATGATAC
TGAGATGCAAATTGAATCCGAATCGGAATCGGAGTCTGATGAGGAACTTGCGGAAATGGA
GGATCGAACTCAGTCCCATCGGCCGGACGATAACCGCGTGCAAGACATGGAAGAGGAAAG
CTCGACTTCGGAGTCCGAGACGGAGCAGGACGCCCCGCGCGCGGACGAGGCGCCCCTGCC
GCCGCGCCCCGACCGCGTCGTCGTCAAGAAGTACAACCCCAAGGAGGCG
(769 bp)

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