SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c23040_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		pleiotropic_regulator_1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
Transcript
Level		FPKM:6.97 TPM:3.12
ORF EntryO_BomaMSG13515_3prime_partial:A_BomaMSG_c23040_g2_i1
Sequence
(Nucleotide)
GTGTGCTCTTCCGATCTGTTTGTTGTCGGGTATTTCTTGGTCTCGACACCGTTAAAACCA
AAAAGCTTTTTCTAAGAACCTTAAGGAATATGCATTAATTAAAAATAAAATTGAATTTAT
ATACTAATTTAACATTACAAGTTAATAGTATTTGGTTTTCTTTAACTAGTTTTAGACAAT
AATTAATTGCCAAAACTTCATAATGTCTGAGGACGTGATTAAACATTCTGTACACACTTT
AGTGTTTCGATCGTTGAAAAGATCGCACGATATGTTCCTAGCTAACCAAGGGATGTTACC
GCCAATCGACGATAAAGCAGAGAAAGTACTGAAATTGGTTAAAGCAAGAGATAGTTACGG
ACAAGTGATGGGTGCAGTGCGGAAGGCTCAGGCCCTGAAACAACAAGAGTCTGTCACCTG
TAGACCTGAAACTCCACTGACCACAGCAGAAACAGTGGAAACTGCACCTTTGCCATCGGA
AGGGGCTGTTGTCCCATACTCTGGACCAACACCTTCACCGTCACCAGCTCACCCCTCGGG
GGCTTTAACTGTACCGCGGAAACCGCCGTCTATGCCCAAACCAAAATGGCACCCACCCTG
GAAATTAATGCGTGTTATATCAGGTCATCTGGGTTGGGTTCGATGTGTTGCTGTAGAACC
TGGAAATGAGTGGTTTGCTACTGGTGCCGCTGACAGAGTGATAAAAGTATGGGATTTAGC
AAGTGGAAAACTAAAAGTATCTCTCACTGGACATGTGAGTACAGTAAGAGGAGTGGTAGT
GTCACCAAGACATCCATATTTGTTCAGCTGCGGTGAAGACAGACAGGTGAAGTGCTGGGA
CTTAGAATATAACAAAGTGATCCGGCAGTACCACGGTCACCTGTCGGCCGTGGTGTGTCT
GGCGCTGCACCCGCGCCTCGACGTGCTGGTGTCGGCCGGCCGCGACGGCACCGCGCGCGT
GTGGGACGTGC
(971 bp)

- SilkBase 1999-2023 -