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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22991_g1_i6
Scaffold_id
NCBI non-redundant
(nr)		roquin-1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:3.35 TPM:1.50
ORF EntryO_BomaMSG13404_complete:A_BomaMSG_c22991_g1_i6
Sequence
(Nucleotide)
CGGATCATGTTTTGAAGTGGATAGAAGTATAAAGTGTTATTTTTGTGATGAGTGTACGTG
TTATTTATAAGAATGCCAATTCAGGCGCCTCAGTGGACGGACTACCTAACCTGTCCGGTG
TGCTGCCGAGAGTTCGGTGCTCCGCCCCGGAGTCCTATCAGCCTCAGCTGCGGCCACACC
CTCTGTAGGCACTGTCTGATTCACCTTCATCGGAAACAATGCCCCTTCGACCAGACGATC
ATACAAGTTGAACCCGAGGAGTTGGTTGTGAACACGGCGCTGCTTCAGCTGGCGGGCTAT
GCGCCACCTTCGCAGCCATATCAGCCGCCTTGTATCAAGGCTCTCCCGGAGTCGGACAGG
CAGGCGTACGACACTGTTATACGCACCATGGAGGAACTTGCTGTATTCTTGAAATGCTCC
GGCAACGCCAATATGAGTGGCAACGGGAATCGACTCTCGAGGCCTATGCAGAGGAAGCTG
GTAACGCTGCTGCAGTGTTCGATAACAGACGAGGAAGGCCGGGGCAGGGCCGCACGGGCA
GCCAGGTCTCTTGGCGAACGGACGGTCACTGAACTCATTCTTCAACATCAGAATCCGCAG
CAGCTAAGCGCCAACTTATGGGCGGCAGTGAGGGCGCGTGGTTGCCAATTCCTTGGTCCT
GCTATGCAGGAAGAGGTGTTAAAATTGGTACTCCTCGCACTCGAAGACGGTTCCGCTCTC
TCCCGAAAGGTACTAGTGATGTTTGTGGTTCAAAGACTGGAGCCGCATTTTCCGCAGGCC
TCAAAAACAAGCATCGGGCATGTAGTGCAGCTTCTGTACCGGGCCTCATGTTTTAAGGTA
TCGAAAAGGGAGTCAGATTCGTCGCTCATGCAACTCAAGGAGGAATTCCGTACGTACGAT
TCATTGAGGCGCGAACACGACGCTCAGATAGTTCAGATCGCCACCGAATCAGGTTTGAGA
ATCGCACCCGATCAGTGGAGTGCTTTGTTGTATGGCGACACCGCGCATAAGAGTCACATG
CAGAGCATCATAGATAAATTACAGACGCCTCAGTCATTTGCCCAATCGGTCCAAGAGCTG
TTTGTCGCGCTGCAACGTACCGGAGACCCGGAACAACTGGTGACAATGAGCATGCATCTC
GATAAACTCGCAAACATCGACGCCAACGCCGATGCTAAAAGCCCAACATGGAAGCAAATG
GCCGATGTGATGACGTCATTAAAGGAAGTTGTCATCGGACTGATTAATTACATTCAGCAA
CAAGCGGCCGGAAAAGACATTAACCAAGGGCAAAAGGATCTACGAAACGAACCATCAACT
AGTCAATCATCACCCCAAGCCCGTACGACACCGACACCTACCCACGGGAAGTACAAGATG
GCTATGTGTAAGGATGTTCTGAGATCATTGTGTCCGAGGGGAAATTCATGCATGTATGCA
CATTCTGAAGAGGAACTAGAAAGATATCGAGCGATGATGGCAAACATAAATGGACACTTT
CAGTTCATGCCCGGGATAGTAGGAGTGCCCGCTCTCCAGCATGGACTGACGCCGATGCAA
CCTGGCTTGGCACCGATCCTACCTGGTCAGCCAATACACATAATTCCCAACATGTATAAT
CAATTCGCGATGCCACAACACGTCGACCCCTCTGCTTTCGGTGCCCAGCCCATGCAGGGA
ATGCCGCCTCAATCGATGCAGTCGCAAGGAATCCAACCACAATCAATGCAATCCCAGGGA
ATCCAACCGCAATCGATGCAACCCCAAGGAACCACACTGCAATCTATGCAATCCCAAGCA
ATGCAAGCTCA
(1811 bp)

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