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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22965_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		U6_snRNA-associated_Sm-like_protein_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
GO:1990726 C Lsm1-7-Pat1 complex
Transcript
Level		FPKM:13.77 TPM:6.15
ORF EntryO_BomaMSG13326_complete:A_BomaMSG_c22965_g1_i2
Sequence
(Nucleotide)
CAGAAACCTTAACCTCAAACTTGAAAGAAAGAAAACAATAATATAAATTCCAAATAGTTC
AAAACTATATTCAAATAAGATTAAAGTAGGTAGTGATTTGAAATTTGATAATTGTAATAC
AAACATGGCATCCAAAGAAGGAGGTGAAAAGTCAAAAGGCAGCCAAGTAACAGGAGATAA
TAAAGAAAAGAGAAGGAAAGAATCTATATTAGATCTTAGCAAATACTTGGAGAAAAGCAT
CCGTGTAAAATTCGCAGGAGGGCGTGAAGCGGCGGGAATTCTTAAAGGCTATGATCCCCT
TCTAAACCTTGTGCTAGACAATACTACGGAGTTTCTAAGAGATCCTGATGACCCATACAA
ACTTTTGGATGATACAAGAGCTTTAGGTCTTGTTGTTTGCCGAGGTACATCAGTTGTTTT
AATATGTCCAATGGATGGTATGGAAGCAATACCAAACCCTTTTATTAACCAGGAAGGATA
ACTATAATTGTGATAAGAATAAATTTTTAAATAAGGCATTTACATTTTCTTTTATATTAT
CACAAA
(546 bp)

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