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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22957_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
Transcript
Level		FPKM:5.31 TPM:2.37
ORF EntryO_BomaMSG13316_3prime_partial:A_BomaMSG_c22957_g2_i1
Sequence
(Nucleotide)
AAGATTTGACGTATGTTTATCTCTGTAGAAATCAAGTTTTGTACCTGCAATACAGATAGC
CATAATCATATGGTCATCAGGTGTTGAATATCATGTAATATTTCCAAACACTTAACTGTA
CACATTCTACATCTAAAGTTGTAACGTTCTAACGTAATAAATGCAAGAATGGCTAAACTA
AATCCAAGAACGGGATTTGTGATCAAACTTTCCGAAGAGACAGTTCAAAAGTTAGCGGAA
GAGGAAAAAGAAACAAAAGAAAAATCTACATATAATCAGATAGAGGATACTACATCGGTA
GAAGATATTAATAATGACAAAATTCAAAATGTTCAAGATGTGAAAACAACATCACAAACT
TTAGATGTACCTACTTCCGATTCCATAGAAAAATCTACTTTAGAAAGTACTCTGCAGAAA
GAAAATTCATCACAAACTGAAAAAACCGTTCTGAACATAACTGATGATAAGGATGAAAAT
GATAAGGATAATACACTTGAAGATAATGAAAAAACAAAGAAACCCTCCAAATCTATTACT
GATTCTAGTACTTGGGGTGAGTATGCATCATACATAACTTACAAAGATAATGAAGCTATA
TATACTGACCCCTCATCAGGTCAAGCTTACACTTGGAATAAAACCAGCAATGCTTGGGAT
GCTAAAGGTGATGAAGCACCTGGTCGTGTTTACAGCTATGAAGATGACACTCATATATAC
ACGGAGGCTGATGGTTTGAAATATTTTTGGGATGAAACCAAGAAGGCTTGGATACCAAAA
GTTGATGATGACTTTTTAGCTTATTATCAAATGTCTTATGGATTTATTGAAAATAAGAAA
GATGATGATGAGAATGAGAAAGGTAGTGACAAGAAGAAGGAGTTGCAAAAAGAAGCTATG
GCTGTCAAAAGGAAAAGTGAGCCACAGTGGTTTGAACCTACTGATGATAAAAACACCAAA
GTTTATGTATCAAACTTACCTCTAGACATGACTGAACAAGAATTTGTGGACTTAATGCAG
AAGTGTGGTCTCGTTGAACGAGATCCAAGTAACCAAGAAATGAAAGTTAAATTATACAGA
TCGGAAGAG
(1089 bp)

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