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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22840_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_regulator_of_nonsense_transcripts_2_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:8.60 TPM:3.84
ORF EntryO_BomaMSG13080_internal:A_BomaMSG_c22840_g1_i1
Sequence
(Nucleotide)
GACAAAGAAGAGCATAACAATATACCAATTTTGTTATCATTTTGCAAACACTGTGGTGAT
GATTATGCTGGACTTATGCCTAAAAAAATACGAGAAGCTTCTGAGAAATATAATATTCCT
GTTCCTCGAAATACATTTTTACCGGCAGAGAAACAAACAGCAGTTAGAACTCTCTTGAAA
GATTACTTTCTTTCACTAACCAAACATCTGCTGGCGGAAAGAGCCCAACTTCAAGCTCTG
CATGCAGCAAATCAGAGGACTCTGCACACCAGAGGAGAACTCTCACAAGAAAGAAAAGAA
CAATTAGAACAACATCAGACAACTTATGACAAGCTACTAGTAAATGCACAAAATTTTGCT
GAAGTTCTTGGTGAAGATTTGGGTGAAGCTGGTGAACCTCCCACTTTGTCCCTGACTGTT
ATAGAGACTCAAGGAAGTGTAACCATTGGTGGCAATGAAGACATCACTATGCAAGCCGGT
ACTGATCCTTGGCAGGACGAAGATTCTAGAACATTCTATACATGCTTGCCTGACTTAAAA
GTTTTTATGCCTAACTATCAAATGAAAGAGACTGTGAAAAGCAAAACTGAAACGGTAACA
GAAGAAATGCTAGATGAAGATTTGAAGGAGGATGAATTAAGTGACAATGAGGACCCATCT
GTAGTTCAAGAAGTAGAAACTGAAGAAATACAACCACCAAATGTTTCCAATAAACATGGA
TTAGATACATTTTTGAATGAACTTCCCAACTGTATCAACCGAGAACTCATAGATAATGCA
GCAGTTGATTTTATCCTGAATCTCAATACAAAGAATAATCGGAAGAAACTATCAAGAGTT
CTCTTCAGTGTTGCCAGAACAAGGCTAGATCTGTTGCCATTTTACTCAAGATTTGCTGCG
ATTTTATATCCAGTACTGCCAGAAGTTTGTGTTGACCTGTGTCAAATGTTAAAACAAGAC
TTTAAGTATCATGTCAGGAAAAAGGATCAAATAAATATTGAATCGAAGATAAAAGTGGTG
CGATTCATTGGGGAACTGGTTAAGTTTAATTTGTATTCGAAAATGGAGGCGCTGTACTGT
TTGAAAGTGTTGCTGCATGATTTTAAGCATCACCATATCGAGATGGCTTGCAATCTGCTT
GAAACGTGTGGTAGATATTTATACTGTAATCCAGATACACACCAAAGGACTATGATATAT
TTACAGCAAATGATGCGAAAAAAAACTGTTTCAGCTCTAGATTCGCGATATGTAACACAG
ATAGAAAACGCATTCTATTACGTTTGCCCTCCCGAAACTCCTGTTCAGCCTAAAGAAGAA
GAACCACCACTTCATCAATTTATCAGAAAAATACTTCATGAAGACTTGCAGAAAAGTAAT
GAGGAAAAAATTCTTAGGTTAATGCGAAAACTGAATTGGGATGACCCGGAGGTATCCGCC
ATTGCCATACAACATCTCGCAGGAGGTTGGAGGGTGAGAGCAAGTGCCAGAAGGGCTCTG
GCCAGACTGACAGCTGAACTGGCAATCTGGCAAGAAGTAGTAGCTCCAGCAGTCGTTGAC
ACAATATTAGAAGAAATAAGGGTAACAATGGAAGACCC
(1598 bp)

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