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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22656_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		tRNA-splicing_ligase_RtcB_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003972 F RNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008452 F RNA ligase activity
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0072669 C tRNA-splicing ligase complex
GO:2000237 P positive regulation of tRNA processing
Transcript
Level		FPKM:23.03 TPM:10.29
ORF EntryO_BomaMSG12666_3prime_partial:A_BomaMSG_c22656_g1_i1
Sequence
(Nucleotide)
TTCGAGCTTGCACTTCTCTGAACGCTTCTTTCAATTTTCAACTAAGTTTTCAATTGCCAT
TTACCTACGTTTTTCAAACCTATCCAGTAGGTTTAAATAGCATTAACACACCTTTTCGAT
ACACAAGTAGTGCAAAATAATGGTTGTAAGGCAGTATAATGAAGAACTTAAATATTTGGA
AAAAATTAATCCATATTGTTGGAGAATTAAAAAAGGCTTCCAACCAAATATGAATGTTGA
AGGAGTGTTTTACGTTAACAGTACACTTGAGAAACTAATGTTGGAGGAGCTTAGGAATTG
TTGTAGACCTGGTATGTCAGGTGGATTCCTTCCTGGTGTAAAACAGATAGCTAATGTTGC
AGCTTTACCGGGAATTGTAGGCCGGTCAGTGGGATTGCCTGATGTTCATTCTGGATATGG
GTTCGCTATAGGAAATATGGCAGCTTTTGATATGGATGATCCCAAATCTATAGTATCTCC
AGGAGGCGTAGGATTCGATATAAACTGTGGTGTTCGTTTATTGAGAACAAATTTACATGA
GAAGGATGTTCTACCTATTAAGGAACAATTAGCTCAGAGCTTGTTTGACCATATACCTGT
TGGAGTTGGCTCCAAGGGTATTATTCCAATGAATGCACGTGATTTGGAAGAAGCATTGGA
AATGGGTATGGACTGGTCTCTAAGGGAAGGTTATGTTTGGGCCGAAGATAAGGAACACTG
TGAAGAATATGGAAGAATGTTGAATGCTGATCCATCAAAAGTCAGTCTCAGAGCAAAGAA
AAGAGGTCTACCTCAACTGGGCACACTAGGAGCTGGAAATCATTATGCAGAGATTCAAGT
TGTTGATGAAATATTTGATAAATATGCTGCTGGAAAAATGGGTATTGAAAGTATTGGTCA
AGTTTGTGTGATGATTCACTCTGGAAGTCGTGGTTTTGGGCATCAAGTAGCAACTGATGC
TTTAGTGCAAATGGAGAAAGCTATGAAGAGAGATAACATAGAAACTAATGATAGACAACT
TGCATGTGCCAGGATAAAATCTGTTGAAGGTCAAGATTATCTTAAAGCTATGTCTGCTGC
TGCCAATTTTGCTTGGGTGAACCGTAGCTCAATGACATTCTTGACCCGTCAAGCTTTTGC
AAAGCAATTTAAAATGGCACCTGATGATCTTGACATGCATGTCATATATGATGTGTCTCA
TAATATTGCCAAGGTTGAAGAACATGTAGTAGATGGGAAATTGAAAACTCTACTAGTACA
TAGGAAGGGCTCAACTAGAGCATTCCCACCAAATCATCCATTAATACCTGTGGATTATCA
ACTAACTGGTCAGCCTGTACTTATTGGTGGTACAATGGGAACCTGCAGTTATGTACTAAC
TGGTACTCATCAAGGAATGACAGAAACGTTTGGATCCACATGCCATGGTGCTGGTCGAGC
TCTGTCTAGAGCCAAGTCTAGAAGAAACATAGACTACAAAGAAGTTCTAAACAAACTTGA
AACTATGGGTATTTCCATTAGAGTTGCATCTCCAAAACTAGTAATGGAAGAGGCACCAGA
GTCATACAAGAATGTAACAGATGTTGTAGATACATGTCATGCTGCTGGTATTAGCAAAAA
AACTGTTAAATTAAGACCAATTGCTGTTATAA
(1652 bp)

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