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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22654_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_rnf8-A_isoform_X3_[Bombyx_mori]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0000781 C chromosome, telomeric region
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007286 P spermatid development
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0033522 P histone H2A ubiquitination
GO:0033523 P histone H2B ubiquitination
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0035861 C site of double-strand break
GO:0042393 F histone binding
GO:0042803 F protein homodimerization activity
GO:0043486 P histone exchange
GO:0045190 P isotype switching
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070534 P protein K63-linked ubiquitination
GO:0070535 P histone H2A K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
Transcript
Level		FPKM:3.95 TPM:1.77
ORF EntryO_BomaMSG12664_complete:A_BomaMSG_c22654_g1_i1
Sequence
(Nucleotide)
TATTAGTATCTGAAATGAACGATGAAATTCTACCTAAACTAATAACTTGCAAACCTTTAA
AAGATGAATTCAATCATTTGAATGAGATTCATCTAAGCTCTAACGAATTTTCAGTTGGAC
GTGCTACACAAAATGAGGCAATTATACCTTTTCTATCAATATCACGGAACCATTGCATAT
TTAAGAAAACTAACGACAACGAATGGACCATCGAAGACAGAAGTACATTTGGTATTGAAA
TTAATGGAACAAAACTTGGCAAAGGCAAAAGCAAAAGATTATACCATCAAGACATTATTA
ACCTGGAACCCTCTGGAGAATTTTTATACAGATATATTCATTCTAATGATGATTTTGAGA
CACCGAGGAAACGTTTTAAGATTGAAAAATCCCAAAACACGTCTGATGGTGACATCGCAT
ATGATGTGAAAGTAAAATTTGAAGCGTCCCAGAAATATGAGATTGAACATATAGAAGACA
AAATACAGAATGCTAAACAAATGCAAACAACATCATTGATATTAAAACAACAATTAGAAC
TGGATATGGATAGACAGATACAACAGTTGAAAAATGATTACGCATCACAAATAGAAAACT
TACAGGGAGAAAAGGATGAAGTTGAAAAACAAAAGGTTTTTCTCATTGAACAAAGGGATG
CAGAATTAACAGCTGTTAGAAAAGACATGGAAGGCAAAATATCTGAACTAATGAATCAAA
TACAAAGACATAATGAAACCGAAGCCGAATTAATGACCGAGAACAATTTACTGAAAGAAA
ATCTATTAAAAGAAAGGGAAGAATTTATTTCTGAACTAAACCGAGAGAGTTCTTCAAAAC
AAGATATGCTCATGAAACTAGAAACTAAAATCAAGGAACAGGAGGAAATAAGATATAAAG
AAAAAATAGAGCTAGAACAAATGCTTAGAAAAGAAACAGAACAGTTAAGGATAGCAAAAG
AAAAGGAACTAAAAGAACTTGAAGAGCAAAAATTAAAAAGGGAAAGGGAACTAGAACAAG
AATTGGTTAACATTAAACAGAACTTACAAGAACAAGTCAAACAGACTGAAGAACAAAAAA
TCAAAGCTCTACAAGATCTAAATAGACAAAAAGAAGAGATGAAAAAACTAAGTGAAGGGG
AAAAAGCAAAAATGGAACAACTTATCCAGGAGAGAGAAGAAATCCAATTAAAGCTACAAG
AGGCACAAACAGCAGCTGAGAAATCTCTAGCCGATCTGCAGATTCGAGTACAAACAAGAG
AGATTGAATTGGCTGCTTTAGCGGCGGAGAGAATACAACAACAAGCAGATCACTCGAGTG
AAGTCATAAAAAACTTGCAAAATCAACTGGAAATGGTAAAGAATCAACTACAGAGCGTTG
AAACAGAGAAAAAGAAACACTTAAACAATTCTGATTCTGAACCGATTCGTGAAGGCTCAT
CAACACAAACATTCAACGAAGTGGGTGAAGTCATGGAAAGTGAATTACAATGCAGTATAT
GTGCCGAATTATTTGTAAAAGCCACTACACTGAACTGCTCTCACACTTTCTGTTTGTATT
GTATATCGATGTGGAAAAAGAAGAAAAAAGATTGTCCAATCTGCAGGACTTCAATATCTA
CTGAATGCAAAAGTTTAGTTTTGGATACATTTATTGAAAGGATGGTACAGAAACTTCCAG
AAGAAACGAAGTTAAAAAGAAAAGAACTACTTAAATCTAGACAAGAGCTCGAGTCTGAAG
CGGATCGATCGAACATTAGTGAAACCAA
(1768 bp)

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