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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22590_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1_[Bombyx_mori]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
Transcript
Level		FPKM:4.88 TPM:2.18
ORF EntryO_BomaMSG12509_5prime_partial:A_BomaMSG_c22590_g2_i1
Sequence
(Nucleotide)
GTGTAACCGACGCTGCAATAATGGTCGTCTAGAGTTCGATCGCAACCACGTGTCGGTGGC
GTACAAGCGCGCCCAGTTCGTGTTGTTCGACGTCAAGTACCTGCTGGGCTCCGTGCCGGC
GAGCTTCGACGACGACCTGCGGAAGGGATTCCTCCACGGGCTCTCGTTGCTGCTCAACCT
GTTTGTCATGATGCAAGGGATGGACTCGGTTGTTAGATAGGTGGGTCAGCACATGGAATA
CGAGCCGGAGTGGGAGTCCGCGTTCAACTTGCACGTGAAGCTGGCGCAGTCCATCACCAT
GTCGCTGGAGTGGTGCGCGGCCGAGCGGCCCCTCACCGCCTCCGCCTACCGCATGGCGCT
GCGCCGCCACGCCGCCGCCACCGCGCCCGCGCCGCGACAGCTCAAAGAACTGGGTAACCA
GAGCGCGTCCGTGATCCCGTACGACGTCTCCGTGGACCCGGTGTCGATCCATCGTCCCCT
GTCGCGGTACATTGCGGGCCTGCACCTGCTGCTGCACCGCCACGGCCTGTCCTACCACAG
CCCGGAGTTCGATCGACAGGACAAACAAAAGTCGTCGCCGGAGGAACTCATCGAGCCAGT
GCTGCAGACAATGGCGATGATAGCCCAGGTCCACGCCGGCATGTGGCGCAGGAACGGCTT
CGCCTTACTCAATCAACTGTATTTCTACCACAACGTGAAGTGTCGGACCGAGATGTTAGA
TCGGGACGTCGTCATGCTGCAAATTGGCGCATCTCTAATCGAAAGCAACGAATTCATGAT
CCACGTGCTGAACAAGTACAATCTACTGGACTGGGCGTCACCTGACTTCGAGAAGCAAAG
CATCGAGGACGACACGCTGAGACACACAATTAGCATGGTGGAAGAGTTCCTAGGATTACT
AATTACTATTGTCGGTTCTCGCCACGTGCCCGGCGTCGGGGAAGTGACCAACGAAGACAG
AACAAAAAAAGAGATTATACAAATGCTCTGTGTTAAACCGATGCCACACTCGGAACTCAA
CAGGTGTCTACCAGAGGATCAACTGCACGAAACTGGTCTTGAGTCTGTCATCAACGAGGT
GGCGGATTTCGTGAAGCCAACGAGCGGCACGAACCGCGGTCTCTACAAACTCAAATCGCA
CTTGTACGATGAATACGACACTTTCTTCTATCACTACACAAGAGAAGAACTGTCCAGGAG
CGAAGAGGAACAAAGGTACCGGAGGAAGGCTGCCGGTCTGTCGGAGTGCTGCCCGCCGCC
GGTGCTGCCGAAGCTGTCGCCCCCGTTCTCGATGCTGGCGCACCTGCTGCAGAGCGACGC
GGCGCTGCTCGTGCTGCGGACCGTGCTGCTGCGGGCCCTCGACCTGCGGGCGCGCGCCTT
CTCCGAGACGCAAGTGCACAAGGCGCTCCACTTAATGGGCTACGCAATTCGAGACGAAGA
GAGCGGCCACTACGAATTCTTAGCGTTCGCCGAAAGTGCGAATCGCTGCGGTCTCGTGGC
GCTGCTACAGAAGCTGGTGGCCAGTCCCAGAGTGGACGCGCACAGACATCTCGCCAAATG
GGTGCTCACTAGGATAAAAGCTCTGTTAGGAGAAACGGACGACCAAGACGAACAGAAAAT
GGAAACTGATCAGGAAGAGAAACCGAACGCAGCCGAAGCAGAAGCGGAGAAGGAACGTCG
CGCGAAGCTAGCGGCGGAACGTAGAGCTAAGGTCATGGCGCAGATGAAAACTCAAATGAA
AAATTTCATATCCAACAATGCTACGTTGTTCGAGGAAACCAATACCGAGGTAACAGCTGA
AGAACAGGACCTTCGGCCTTTGTACTGCGGAGCTGCTCTCGGAGTGTGGGGGGGCGGAGT
CCCGGAACCTCCGCGGGTTTGCATCATGTGCCAAGAAGAGGCACGCGTCGACGGAACGGG
AGAACCACTTGTATTGGTGGCCTTCGTACAACAATCTGGTGTGCTGAGCCGGATCAGGGA
TGCTGCGGACAACGAGAGGAGTCGGGACGCGTGGTTGCCTGCGGGC
(2026 bp)

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