SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c22147_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_Syf2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071004 C U2-type prespliceosome
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
GO:0071008 C U2-type post-mRNA release spliceosomal complex
Transcript
Level		FPKM:20.82 TPM:9.30
ORF EntryO_BomaMSG11654_5prime_partial:A_BomaMSG_c22147_g1_i1
Sequence
(Nucleotide)
TGTGGCTCTTCCGATCTCATTTTTGCAAGAAAACAAAAGGAAAGAAAACAGTTTACCCAC
AAAATGAATACTCAAAAATGTGAACAAAATAAGGAAGCGGAAGAAAAAACATTTGTCGAA
AAACAGGCTGAACGTATGCAGAGACTGCGTAACTTACACACCGCCCGAAACGAAGCTAGG
ACACAAAATCACCAAGAAGTCGTAGCAGAAGAGGCTAGGAACAAGCTACCAACGAACTAT
GAAGCTAAACGGCGCCAGGCAGAGTGGTTAGTAGAGGATCAGAAGAAACGAGAAGAAGCA
GAAACAGAAGGCAAAAACTACGATCGAGTCAAATTGTTGAATATTTCTGCGATAGAAGCA
GAGCGACTCGAACGTAAAAAAAAGAAAAAGAACCCAGACCAAGGGTTCTCGACGTATGAA
CATGCCACAATACGACAATACAACAGGTTAGTGAAAAACATGCCACCAGCGGATATGGAA
CGGTATGAGAAACAAAAGCAAAAGTATGGTGAAGCATTCTATGGAGGCCCCAACGTCATC
ATACATGGAATGCACGAAGATCGTAAAGAGGCAGTAGACAAAATGGTTGATGATCTGGAG
GGTCAGATTGCAAAGAGAACTAAATATTCGAGGAGACGAATTCATAATGATGATGCTGAT
ATTGATTATATCAACGAGAGGAATGCTAAATTCAATAAGAAATTGGAAAGGTTTTATGGA
GAGCATACTGCTGAAATAAAACAAAATTTGGAGAGGGGCACTGCCATTTAGCTTAAAACC
ACCAGATCGGAAGAGCGTCG
(800 bp)

- SilkBase 1999-2023 -