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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c21894_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		probable_DNA_mismatch_repair_protein_Msh6_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
Transcript
Level		FPKM:3.69 TPM:1.65
ORF EntryO_BomaMSG11210_internal:A_BomaMSG_c21894_g1_i1
Sequence
(Nucleotide)
GCTGGACAAGGTGGTCCGGCGCGAGGTGTGCCAGGTGGCGGTGCGCGGCGCCGAGGGCTG
CGGGCCCAACGACGCGCCGCGCGCCGCCGCACTCGCCGCCTACATGCTCGCGGTGGCTGA
ACAGGCACATAATGATTCAAGCACTTATGGAGTTTGTTTCATAGACACTTCAATAGGATT
GTTCCACCTTGGACAGTTCGAAGACGACAAGCACTCATCGAGACTTCTCACCACACTGGC
ACACTACCCACCAGCCTTGATAATATACGACCGTAAAGCGACAACGGCCCGCACGAGCAA
GCTGCTGTCCACGCACTGGCACGACGCGCGCAGGGAGCCCCGGACCTTGGGGGCTCCCGA
TGTCACGCTCAAAACCTTAGCCGAGAAATATTACAGGACGAATGAGGACGGAGACTGGCC
AGAAGGTATCAAGGAGTTCTTACATCAAGGTGATTCCCTGGGCCTGACACCGGCTCCCAA
CTGTGAACTCGCCATTAAAGCTCTCGGAGGATGCGTTTCTTACTTGACTGAATGTTTACT
GGACATACAAATACTAGGAATGTCGCAGTTCACATCGTACGCTCCACCCGATGTACTGAA
TAGGAAGCTATCTGAAAGGCACAAGGTCGATAATTGTTGGGAGGGCGGCAACACTTTGGT
GCTGGACGCAATAACGCTGAGGAATTTACGGATAGTACAAGACGAAGGCTGTCTGTACGA
TAGATTGAATTTTTGTTCAACGGCTATGGGAAAAAGGTTGCTCTATCAATGGGTTTGTTC
GCCGAGCGCCAATATAAACGTAATAAAAGAAAGGCAAGAAGCTGTCAAATGTTTGTTTGA
CAATCAGGAACTATGTCAAAATGCAAAGAATGTTTTGTCATCATTACCCGATTTAGAACG
TCTGTTAGCTAAAGTACACACTCTCGGAAACTTGAAGCGTTCAAAGCAGCATCCGGATTC
TAGAGCAATATTCTACGAAGAGAAGACATATTCAAAGCGGAAGGTTCTAGAGTTCATCTC
CGTGTTGAACGGCTTCACCTCAGCACTGACCCTTGCCGAGAGGTTCAGTGACGTGGACTC
GGTGTTATTAAAAAGAATCACACAAGTCGAAGGTGGCAATTACCCGGATTACAGGGACAC
TTTGAAATTTTTCAAGGAGGCCTTCAATCAGCAAGAGGCCGAGAAGGAAGGCTGCATCAA
ACCGGGCGCGGGCGTCGACAGAGAGTACGACGGAGCCCTGCGACGAATACAGGAGATAGA
GAGTGAGCTCAAAGAGTATTTAGCCGAGCAAGAGAAACACTTCCGCTGTAGATTGTCTTA
TGTGGGTACGGACAAAAAGCGTTACCAGATCGAAGTGCCGCAGAGCGCTTGTACCCGCGC
CGGCTCGGACTACCACATGGAGAGCGCTCGCAAAGGCTTCAAGAGATTTTCTACCAGCGA
GACGAAGGAGTTCCTGTCCCGCATGATGGCCGCCGAGGAGCAAAAGACGAACGTGCTGAA
GGACTTGAGCCGCAGAATGTACGAGAAGTTCTCGTCCCACTACGCGCAGTGGGAGGCGGC
CGTGCACTGCCTCGCCAGCCTCGACGTGCTGCTGGCGTTCGCAGAGTTTGCACGACAACA
ACACGGCGATATCTGTCTACCCGATGTCACTTTTGATCCAGGGACAAAGCCCTACATAAA
CATCGTGGAGGGGCGCCACCCCTGCATATCGCTGGTGAACGAGTTCATACCGAACGACAC
GCGGCTGGGCGGCGCCGGGCCCGGCCTGCTGCTGC
(1775 bp)

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