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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c21693_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		protein_CASC3_isoform_X3_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
Transcript
Level		FPKM:4.56 TPM:2.04
ORF EntryO_BomaMSG10852_complete:A_BomaMSG_c21693_g1_i1
Sequence
(Nucleotide)
CCGTGCTTGTTTTGACGTTCTTTTATTGCATTTTAATTAATAACTAGTGGGGGTTTTACC
GTCGCTACTGTAAAGTACTCAGCGCGTTTGCCGCTTCGTTTTAGTTAATTGTATTATTTT
AAGCCGCCAATCTGGAAGTTATACAAGTGACACGGGAGGACGCCGAAATGACGTCCGTGG
TACGAAGACGGGAGCACGACGATTCGGGAGAATATTCAGATGCTTCTCAGGACATCGAAC
ACAATAACTCGTTGAACGAAGGGCCGCCCGAGTCCGATTATGACTCGCAGGGTAGCGATT
CTGACCACTCTGAACGGGATCCAGAGGCACAGGAAGGTGAACGCAGAGTTGATGATGATG
AAGATAGGAGCAATCCTCAGTATATCCCCAAGAGAGGAACATTCTACGAGCATGATGACC
GAACCGCAGCAAGCGGCGAGGAATCTGTCAACACGACATCCGAAACGGCTTCAGAGAAGA
AGGAGGGTTCCGAGACGACGACCGAACGACGCCGCCCTCCACGAAAATCTGACATTGTCA
ATAAATGGACACACGATAAATACAACGAGAATGAACAGATGCCGAAATCACGTGACGAGC
TGGTAGCGATCTACGGGTACGATATACGCAACGAAGATGCCCCTCCTCACGCGAGACGCA
ACAGAAGATACGGTCGTGGACCCAACAAGTACACACGTACCTGGGAAGACGAGGAGGCGT
ACCGGAGGCAGAACGCGTTGCCGCTGAGAAAACCACCGAACCCCGAGGAC
(770 bp)

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