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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c21522_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_SPF27_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.26 TPM:2.35
ORF EntryO_BomaMSG10595_3prime_partial:A_BomaMSG_c21522_g1_i1
Sequence
(Nucleotide)
GTAAAATCAAATAAACAAAGAGCGTTTATTGCACTGAAGTAGGAAACCTCTATGGTTTAT
TGCTGTTTATTTTAAAGTGATAAATCACAGTGCTTATTCGTAGTAAAGGGAGTTATAAAT
TTTGTAGAAAATGGCAGGAGAAGTTGTCGTAGATGCATTACCATATATAGACCAAGGATA
TGACGATCCTGGAGTAAGAGAAGCTGCATTGGCCATGGTGGAAGAAGAGTGCAGACGCTA
TAGACCCACAAAGAACTATCTTGAAAATGCAGGACCAGAACCAAGTTCTGCATTCGAAAC
TCCTGCTTTACAACGAGAGATGGAAAGAGTGCAACAGAGATTGCCGATGGAACCATTGTC
TATGAAGAGGTATGAACTTCCACCCCCTCCAGTAGGAAGAATGAGTGAACCAAGTGCCTG
GGCCGAGTCAGTGGACAACTCTCATGCACAGCTGTCTCACCAAGCTATCAGAGTTCTCAA
TTTAGAGTTGCAGTTAGAGTATGGTTCCGAAGCATGGAGGTCATACCTCAATACACTTCA
AGCATTAGTCACAAGAGCTCAAAATGAACACAACCAGTTACGTAAACAAATAGGCTCTGT
GAACTGGGAACGTAAACGCGTACAAACAGCAAGCGGTGCGAGGTTGCGGGCATTGAGGCG
ACGGTGGGCGCAACTTGTCTCAGACAATTATAGACTTGAAAGAGCCCTACTTCACTTACA
ACAGGCAAAGGGAGAAGTACCAGTAGAAGAAGGAGAAGAAGCCGATTTGGACATTGTAAA
GTTACCTGAAAAACTCAATTCCGAAACAGAGAAGGAAGTTCAAAAGAAAATTGAAGATAT
GTTTGCGGAGATCG
(854 bp)

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