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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c21475_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		exosome_complex_component_RRP41_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0030307 P positive regulation of cell growth
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:5.72 TPM:2.56
ORF EntryO_BomaMSG10514_3prime_partial:A_BomaMSG_c21475_g1_i1
Sequence
(Nucleotide)
GAATTATTAGAATCACCGTGAATATTAAAAACTGAATCGACTATGATAATATAACATAGT
AAAAAGCAAATATTTTTAACAAAACAACTCAACATATTTAACAATTCATTGTTAATGTGT
TTTTGTTAGAAGTTAAATAATGCCCGCTGCCGATCTACTCTCAAGTCAAGGACTACGTCT
TGACGGGCGGAGACCAAATGAATTACGTCGGATAAGATGTAAACTTGGTGTATTCACCCA
GCCCGATGGAAGTGCGTATCTCGAACAAGGAAACACGAAAGTGCTTGCAGCCGTGTATGG
ACCCCATCAGGCTTCAAAATCGAAGATGTCCACAGAAGCTGTAGTTGTCAACTGCCAATA
CAGCATGGCTACATTCTCAACAGGTGAACGAAAGAACCGACCTCGTGGGGATCGCAAGTC
ACAAGAAATGTCAATGCATCTCCGTCAAGCTCTAACTGCTGCTATTAAAACTGAAATGTA
TCCAAGGTCGCAAATAGATATTTACATAGAAGTATTACAGGCCGATGGTGGTACGTATTG
TGCCAGCGTGAATGCAGCCAGTCTAGCGCTGATAGACGCTGGTATACCTCTGAGAGCGTA
CGTGACCGCCTGCTCGGCGTCCCTGGGCCGACGAAGCGCCACCCACGAGCCCCTGGTGGA
CGTTAGTCACATCGAAGAAGCAGCCGATGGAGTATGTTTGACCGTAGCCAGCTTACCCAG
CACCGGAAGCATAGCACTATTGGAGATGTCAAATCGTCTCCATATGGACCATTTCAACAT
TGTATTGACCAGAGCTATGCAGGGCTGCAGAGATATAGAGGTGATCCTAGACGGAGCTGT
GAGACAACATTTGGCAGAGGGATGGACG
(868 bp)

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