SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c13193_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pseudouridylate_synthase_7_homolog_[Bombyx_mori]
Ontology
GO:0000455 P enzyme-directed rRNA pseudouridine synthesis
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008380 P RNA splicing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0031120 P snRNA pseudouridine synthesis
GO:0042254 P ribosome biogenesis
GO:1990481 P mRNA pseudouridine synthesis
Transcript
Level		FPKM:3.56 TPM:1.59
ORF EntryO_BomaMSG3541_internal:A_BomaMSG_c13193_g1_i1
Sequence
(Nucleotide)
GTGGCCAGAAGAATATGTACATTTTATAGTACATAAAGAAAATTGTGACACAATGGAGGC
TGCTGGCAAGATAGCTGCTAGGCTAAGACTCAACGTGAAGCCCACGATGTTGGGATATGC
CGGTACCAAGGATCGTCGCGCAAAGACGTCGCAGTGGTTTAGCATGCGCAAGGTGGATCC
TCGCAAGATTGTGGCAGCGTGTCAGGATCTCAGAGAAATACACGTCGGGAACTTTACTTT
CAGTCCTAAACACATTAAACTTGGCATGCTGAAGGGCAATAGGTTCCGCATCGCCATCCG
CAACGTGGAGGACGGGGCGG
(320 bp)

- SilkBase 1999-2023 -