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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c12254_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIM9_isoform_X3_[Bombyx_mori]
Ontology
GO:0000149 F SNARE binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0008021 C synaptic vesicle
GO:0008270 F zinc ion binding
GO:0016079 P synaptic vesicle exocytosis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0031410 C cytoplasmic vesicle
GO:0035544 P negative regulation of SNARE complex assembly
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045202 C synapse
GO:0045955 P negative regulation of calcium ion-dependent exocytosis
GO:0046872 F metal ion binding
Transcript
Level		FPKM:1.41 TPM:0.63
ORF Entry
Sequence
(Nucleotide)
CTAGCATACTCTAATAAAAAAAAAGAAATCTTACAGGAATCTTGTGAGGAATTGGAGAAG
CAAATTGACAATGCATGTGCAGAACTAACTTGTGCCATAGAAAGACGACGAGATGAATTA
ATTCGTGCAGCACGCAGTACCAAATCTCAGGCAATTGCAAACATGAGATCTCTTACTTCG
CATGCTGCGCAGAAACTAAGAGAAGCCACTGCCCTGCTACACTTCTCTATTGAAGCATTA
AAAGAACCAGATCAGGCTGCATTTCTTCAGGTGGGC
(276 bp)

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