SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp58210_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_17_[Papilio_machaon]
Ontology
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.53 TPM:5.12
ORF Entry
Sequence
(Nucleotide)
AACAAATCAAACAAATACCTACCTACAAATGTTGATATGAACTATTTTAATCGTGTTCAT
TTTTGTTTAAGAACATTAAAATAATTGATGAATTGTGACATCATCATCACTGTACATACT
TCAATATAAAATTTTAATTATTAACAAAAATGCTCAATATAAAAAAATACGGCAGTAGTT
CAGAGGATGAAAGTGATGATACAGAAACAAACCAGTTCAGCAATGAAGCTCTCTTGACCC
ATCTTAAGCCTGTTGATCCGAGTTTGTCGGTGGCCAAGACCATGCAAGTATGTGCTGCTC
CAGCTGTGGTGCCTACGAATGAAGATGACACTAGAGTTTTAATACCAGCAAATGCAAAAG
AGTTAACACACAATCCAAAGTATGAAGAGCTGTTTGCACCTGCTTTCGGACCAGAGAATC
CATTTCAAACACAGCAAATGAAGGCAACGAGAAACATACTATCTGGCTATGTAGAATTGG
CACATATTAGCGATTTTCAGTTTGAGAATCAACGAAGAACATTTACGAGTTATGGTTATG
CTGTAGATCCTTCTACAAATGTTGAGGAGCAAGAAGGAGATGCTATAGTGAAATCTGCTA
TGATAGACCCTAAAGAAGATACAGAAGGCAAATCAGTTTTTGAAACAATAAAAAAGCGAC
CCCTAGATAAAAAGAAGAGAACCAAAAATGACAATCCTGAAGACATTAATGGATTTCTAG
GACCCTGGGGAGGTTTTGAAGGAGAACAGAGGATAATGAAGCCGGAAGGCGATGAAGCAA
AAGAATTAGAAGAGATTTTAGCTAAGAGACAGAAGAAAGGAAAAGTTGATGATGATAAAC
CTTTGGAAGAGAGATCTATATTACACATTGACAAGGTCACCGATTATCAGGGTCGGTCTT
GGATCGAGGCGCCCCGAAGCGAAACACAACTGCGAAGCGAGTCACCTCCCGACAAATGTT
TCCTGCCGAAGGCGCACATATTCACGTGGAAGGGTCACACGAAGGGCGTGGCGGCGGCGC
GCTGGTTCCCCTCGACGGCGCACCTCATGCTCTCCGCCGGCATGGACTGCAGGGTCAAGA
TATGGGAGGTGTACGGTGACCGTCGCTGCATCAGAACGTATTTCGGGCACCGGCAGGCCG
TCCGAGACGTCAACTTCAACAATTCCGGGAAACAGTTTCTGTCGGCTGCGTACGACCGGT
ACATAAAGCTGTGGGACACGGAGTCGGGCGCGTGCGTGTCCCGGTTCACGTCCCGGAAGG
TGCCGTACTGCGCCAAGTTCCACCCGGACGCCGACAAACAGCACCTGTTCGTCGCCGGCA
CCTCCGACAAGAAGATCATATGCTGGGACGTTCGGAGTGGCGAAATAGTCCAAGAGTACG
ACAGGCATCTCGGTGCGGTCAACACCATCACCTTCGTCGATGAGAATAGGAGATTCGTGA
CCACATCCGACGACAAGAGTCTGCGGGTCTGGGAGTGGGACATCCCGGTGGACATGAAGT
ACATCGCGGACCCGACGATGCACTCCCTGCCGGCCGTCACCGCCGCGCCCAACGGCAAGT
GGCTCGCGTGCCAGTCCATGGACAACAAGGTCATCGTGTTCAGCGCGCTCAACCGCTTCA
AGATGAACAGGAAGAAGACGTTCACCGGGCACATGGTGGCCGGGTACGCCTGCACCGTGG
ACTTCTCCCCGGACATGAGTTATTTGGTGTCGGGTGACGCGGACGGGAAATGCTACATTT
GGGATTGGAAGACGACGAAACTTTATAAGAAGTGGAAAGCTCACGACGGAGTTTGCATAA
CCTCACTGTGGCACCCACATGAGCCCAGCAAGCTGCTTACCGCGGGCTGGGACGGCGCCA
TCAAATACTGGGACTGAATAAAACAATCG
(1889 bp)

- SilkBase 1999-2023 -