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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp26118_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		poly_A_binding_protein_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0006413 P translational initiation
GO:0008022 F protein C-terminus binding
GO:0008143 F poly(A) binding
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0008494 F translation activator activity
GO:0010494 C cytoplasmic stress granule
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0036464 C cytoplasmic ribonucleoprotein granule
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0045070 P positive regulation of viral genome replication
GO:0045727 P positive regulation of translation
GO:0048255 P mRNA stabilization
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Transcript
Level		FPKM:505.03 TPM:467.64
ORF Entry
Sequence
(Nucleotide)
TTTTACTATCTACTACCAACGTCTAACGGTAGCTTCTGTATTTATGACTAGTAATTTTAA
GACATTTTGATCAGTATTTCAAATAAAACACCAGACTTATAAATATTCCAAAGAATATAA
TTTTAACCAAACATGTAGCATCAGTAAATTACTAGAGACCAAGTTTTCAATCCATGGTAT
CAGTCAAAAACTGATGTGAAAGTAATAATAAATGAAAGAACTAAAGCCAACTCCCATATC
TTGAGATAATAAATCAAACTGAAATGAATGTATCTAAAGTTCTCAAACAACTTTAACTTA
AAATAAACTTCTTAGTCAATGTAAAAGTCAAAGAGTTCATTAACTCGCAACGTAGAAATG
TTGACAGTTACGTATTTTTGTTTGTGAACTTGCACTCTTTAAAGTTACATAAGAGTGCAT
AACCCACTTTTAATTTTTTTACGATTTTTATATGTATTTTTTTTTAATGAATTTGATTAT
ATTTTATCAAAGAATATAAAGCAAATTGATAAAAGCGTTACAGAATTAAAGCAGCTGACC
ACTTCTTGATATGCCAGCTAGCTTTTCTGATATTTATTCTTTTTTAGTTGCTTGTTGTTT
AGCTTGATGAGCCTGCAGTACAGCAACAGCTTCATCTACTTTAGCTTTCAGAGACTCTGC
ATGTTCTAACATATGAAGAAGTTCTGAATTATCAATTTCCAAAAGCATACCAGTTATTTT
CCCAGCCAAATCAGGGTGCATTCTCTGAATAAGTGGAAACAGTCGTTCCCCAAGCATCTG
TTTCTGTTCCTGGAGTGGTGCTGCTGCAAGCATAGTAGAGGTCAGAGGTTCTTGTCCTTG
GATATGCACTGCTGGTTGTGGAGCTGGTGGGTTGCGCATGTTTGGTGTATATTTATAATT
GGCTGGGCGACTGCTTTGAGATACTAAAGGTGGACGAATAGATGCAGCAGCAGCAGCAAC
TCCTTGCTGTCCAGTTATGGGTCTTGCACCTAGCGATGTTCTTATTGTAGATTGGGCCGG
AGCTCTCGGTGCTGGTCTGTAAGTGGGTTGCATATTTGCATATGCAGATGCTGCTTGTGT
GCTAGGCCTTACAGGGGGCTGTGCATTCCACCTTGGAGTTGTAGGTCTTATTTGAGTCAT
TTGAGCTGGTCCATAGTAACGTGGTGCTGGAGGGAGCGACGGTACAAAAAATCCACTTGC
ACCACTAGGCTGGAATATTTGACCCATTTGCTGCATGCGCATACTAGCCATTCTCTGCAT
GTACTGAGATGTTAAGTGCGCTTTACGGTCCTCCTTGCGTTGAGCTAGTGCAACATACAA
TGGTTTAGTTCCTACAATACGTCCATTCATCTCAGTAACTGCTTTGGTAGCTTCTTCAGG
AGAAGAAAAACAGACAAACCCGAAGCCTTTACTACGTCCATCTTCTAGCATTACCTTCGC
AGACGTAATAGTCCCAAATGGTGCAAATTCTTTGCGCAGACGTTCATCATCAATTGTATC
ATCCAAGTTCTTAACATACAAATTAACACCTTGATAACGAGTTAGGCGTTCAGATTTCAG
TTGTTCAAACTTACGCTTCAACTCCTTTTGACGTTCAGCTTTCTTTTGTGCACGTCCAAC
ATAGAGAGGCTTACCCTCAACTAGCTCTTTGCCATTCAATTCAATGCAAGCTCTTTCAGC
AGCATCTGGGTCTTCAAAAGCAACAAAACCAAAGCCTCTAGAATTGCCATCATCTTTGTA
CATAACTTTGTGACTTGTAATGCGACCATATTTCTCAAACATATCTTTTAACATTTCATC
AGAAAAGTCTTCTCCAAAGTTCTTTACATACACATTGGTAAACAGTTTAGCCTTCTCACC
AAGTTCCTTTTCGCGCTCTTTGCGTGGAATGAATCTGCCTACATAAACCATTTTACCATT
TAACAACATCCCATTTACCTTTTCAATAGATTTATTTGCAGCTTCTTCAGTTTCAAAATG
AACAAAACCATACCCTTTTGAAGCACCAGTCTCATCTTGAGCTACTTTACAACTCAAAAT
ATTCCCAAACGCTGAGAATGTATCAAATAAAGCCTTGTTGTCAATAGATTTATCAAGGTT
TTTTATAAAAACATTCCCAACTCCGGATTTGCGCAGGGAAGGATCACGTTGGGACCACAT
GATTCTAATGGGTCTTCCTTTGATAATATCAAAGTTCATGGTGTCTAAAGCTCTTTCAGC
ATCCGTAGGTTGCTGAAAATTAACATAAGCGTAGCCTAAGGATCTACGGGTAATCATATC
GCGACAAACACGTATAGATAGGACGGGCCCAGCAGTCGAAAATTTTTCAAACAACATGGC
CTCGGTTATATCAGAGTGTAAATCTCCAACATACAGAGATGCCATCGGATAACTTGGTGG
ACCAGGATTCATTTTGATGCTATTTAATACAATTTCACAGGAACATTAACAGACTGCAAA
TGCAAAACTTCACTTTCTCTTTATATGACTATCGCATTCCAATGACCACGTTGCACGCTT
ATGTCCACTATCTTAAAATCAAATGATTCCCTTTTCGTTTTTGTTATTTTGCTATTTTTT
TGGGTTTTTTTAAATTTTATGTTTTTTTTTTTTTGTTTTACAAGAATATTTTCACGAAAT
CCTGAGGATTGTGTGACCCACACGAGGAAAC
(2671 bp)

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