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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25774_c5_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_tRNA-splicing_endonuclease_subunit_Sen34_[Papilio_xuthus]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0016829 F lyase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:3.66 TPM:3.39
ORF Entry
Sequence
(Nucleotide)
AATACAAAGTTCATACTTTGTATTGTAATACACTGTTATATTACTTGACAGAGATTGACT
TACTTAATAATATAATAATTTTATTTTTTACTTAATATAATTTATTGTGGGATGAACGGA
TTTCATATGGCGACTTAGACTGCAAATTGAGCTCGACAATAATGTTAATATACGAGAGCA
GTAGATGCATTGTTTCGGCGCGATATCCTCAAAGTGCATCCAAGGAGGACTGTACTTTCA
TTTAGACGCCGTTATTTCTTTCACTTATTAAACACGCATTAAAACAAATAATAAAACTAT
CTTCAAACAAGTGCTTAAGTAATTCAAATACAAAAATTAATATGAAATATTACTAAACAA
TTACGAGCGACTAGCGATTTTACAAAAGTTGCGAATAAAAAATTAAGTAAGTACTTGCGG
GAAACTACCGGCTGGCCGCATGAAAAATATAAACACAAATACCTATATTAAAATTCAGAC
GTACCATAGGTATAAAAATGTACCTAGCGGCCAGGACATACGGTTCCAAATCACTAGGAA
TAATTCCGTGTCGCTTGCTCATTTATTTTGCGTCGATCGGTCTGTCTCGCTCGCTCGGTT
CCGTTCGTGTATTAAGCAACATTACACGACAAAGAAAGAAACATGTTGGGTGATGGTGTG
ATGTTTGTTTCCTTCGCGTAATGTGTGATGTTGCATTACATCGTAGAGTAATATTACCCG
AGTAATATCACTCGCATTACTTACACATGTCTACATCAAAGAAGTAATTCAACAATTATG
ATACCGATATACGTTGAAAAAGGAATTGGTTATTTGTGGAACTCGGAACATTGGTATATT
TTACGTACTCAGCATCGAATATGCTCTGCTTTCGTTGGCTCAGTACCTTCATTTCCAAGG
CAAAATGATTTCTTGGGGCTTCCGATTGCATTATCTTCTGAAGAAACAGCATTATTGGTT
GAAAATAGGATATGTGAACTTCATGAAATGCCAGCTGAATTTTTTAAATATGAACCAACA
GAAAAGGATAAAGAATTAATGGAAGAATTTTTAAAAAAAGTACTAGAACAACAAGCATCA
GCATTAAAGAAACGCAAAATAGAACAATTATCACAAAAGATTGATATCATTGTGGCTGGG
AAAAAGAAAAACCTCATAAATAAAGATGCAAATATTGATAAGGATGCAATGTTGGAAGAA
GAAATAAAAAGAATACAAGATTTAGATCCAGACCACACTTTAGTACAACTTCCACAAGAA
ATTTATAGAAATATAGAAACCAGTCCAGTAGGTTTGGATGTATTAAGACCAAATATTTTG
GAAGGAGATGGTGCCATTAAGTATTCTATATTCAAAGACTTGTGGGAGAAAGGATACTAT
GTTACCAGTGGATCAAAATTTGGATGTGATTATCTTATATACCCAGGCGATCCTATGCAG
TTTCATGCCTCGCATATGGTTCGATGCGTTTGTAATCAAGAAAATGTTTTCCACCCTAAA
AGCTTAGTGGCGTTCGGCAGATTATCAGTGGCCGTCAATAAGTATGCAGTTTTTGCATAT
AGAACTCAGTGTGTGCGAATTGCATATCAAACTCTGCAATGGCATGACAGCATGGATTCT
TGAAGAATCATTAAATAATAATAAAGTTTAATAAAGG
(1657 bp)

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